I get that. I put my script as post-receive in the hooks directory in the git folder on the server. The script seems to run just fine up until it tries to do the pull/fetch. I included the error messages in my post. I was wondering if this is some sort of issue with the underlying git implementation of the driver in bonobo or is this something I have to fix somehow in my git installation.
I'm able to run the commands just fine outside of the script which is why I posted here thinking it might be a bug in something happening in bonobo.