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Michael Doube
10/26/15
Do not use Structure Model Index (SMI) for measuring plates and rods
Dear all, SMI has been included in BoneJ since its early releases, because it was a standard
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Do not use Structure Model Index (SMI) for measuring plates and rods
Dear all, SMI has been included in BoneJ since its early releases, because it was a standard
10/26/15
Kalle Lehto
, …
Michael Doube
4
10/26/15
BoneJ Particle Analyzer NaN in Ellipsoid Major, Int. and Minor radius
Hi Kalle, The code has a clue. The default value for the result entry is NaN. If the ellipsoid
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BoneJ Particle Analyzer NaN in Ellipsoid Major, Int. and Minor radius
Hi Kalle, The code has a clue. The default value for the result entry is NaN. If the ellipsoid
10/26/15
tommaso Banzato
,
Timo Rantalainen
2
10/25/15
Bone J and conventional (clinical) CT scans
Hello Tommaso, > I am trini to run the analysis on conventional CT images in DICOM format but >
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Bone J and conventional (clinical) CT scans
Hello Tommaso, > I am trini to run the analysis on conventional CT images in DICOM format but >
10/25/15
Michael Doube
10/23/15
The BoneJ group is migrating to forum.imagej.net
Dear BoneJ-ers The time has come to move on to a new forum for discussing BoneJ-related issues. The
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The BoneJ group is migrating to forum.imagej.net
Dear BoneJ-ers The time has come to move on to a new forum for discussing BoneJ-related issues. The
10/23/15
Behdad Pouran
, …
Michael Doube
4
10/14/15
Changing pixel values in a stack
Additionally, Z should be initialised to: Z = nSlices(); getSliceNumber() returns the index of the
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Changing pixel values in a stack
Additionally, Z should be initialised to: Z = nSlices(); getSliceNumber() returns the index of the
10/14/15
Richard Domander
10/12/15
A new developer on the BoneJ team
Hi everyone, I'm Richard, and I started last Monday (October 5th) as the research software
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A new developer on the BoneJ team
Hi everyone, I'm Richard, and I started last Monday (October 5th) as the research software
10/12/15
dbgt
10/9/15
Measuring bone density and ratio of new bone formation, by microCT TIFF images
I am learning to use imageJ and BoneJ, but i need desperately help I did some experiments in a rabbit
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Measuring bone density and ratio of new bone formation, by microCT TIFF images
I am learning to use imageJ and BoneJ, but i need desperately help I did some experiments in a rabbit
10/9/15
Waldir Leite Roque
,
Michael Doube
2
9/21/15
Anisotropy plugin output
Dear Waldir, 1. The eigenvalues ("fabric tensor values") cannot be calculated from the
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Anisotropy plugin output
Dear Waldir, 1. The eigenvalues ("fabric tensor values") cannot be calculated from the
9/21/15
hb...@cornell.edu
,
Michael Doube
2
9/20/15
Tb.Sp not showing up in Results table
Hi Heather, It might be that Spacing is not finishing because there is a lot of empty space outside
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Tb.Sp not showing up in Results table
Hi Heather, It might be that Spacing is not finishing because there is a lot of empty space outside
9/20/15
SHARON SCARLAT
, …
Daniel J Schiferl
7
9/16/15
Recurrent Errors with Density Distribution Analysis
Sharon, I have used pQCT animal systems if you're looking. I've also attached my latest bone
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Recurrent Errors with Density Distribution Analysis
Sharon, I have used pQCT animal systems if you're looking. I've also attached my latest bone
9/16/15
Mark Begonia
,
Michael Doube
2
9/13/15
BoneJ Analysis of DICOM vs. Bitmap Stacks
Hi Mark > I have used BoneJ extensively to analyze the area moments of inertia You mean the second
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BoneJ Analysis of DICOM vs. Bitmap Stacks
Hi Mark > I have used BoneJ extensively to analyze the area moments of inertia You mean the second
9/13/15
Michael Doube
,
Ayman Mostafa
3
9/7/15
BoneJ 1.4.1 released
Dear Ayman, The short answer is no. The radiograph is recording an integral of point-by-point X-ray
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BoneJ 1.4.1 released
Dear Ayman, The short answer is no. The radiograph is recording an integral of point-by-point X-ray
9/7/15
Mahmoudi Sidi Ahmed
8/24/15
Check Histogram values
Dear members, I would like to check in a separated file (as result.txt) the values of my calculted
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Check Histogram values
Dear members, I would like to check in a separated file (as result.txt) the values of my calculted
8/24/15
Mahmoudi Sidi Ahmed
8/21/15
Check the Hisgram values
Dear members, I would like to check in a separated file (as result.txt) the values of my calculted
unread,
Check the Hisgram values
Dear members, I would like to check in a separated file (as result.txt) the values of my calculted
8/21/15
Yi-Ling Lin
,
Michael Doube
3
8/4/15
ROI as a separate stack
Thank you! I will try it. Yi-Ling On Tuesday, August 4, 2015 at 12:12:51 AM UTC-7, Yi-Ling Lin wrote:
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ROI as a separate stack
Thank you! I will try it. Yi-Ling On Tuesday, August 4, 2015 at 12:12:51 AM UTC-7, Yi-Ling Lin wrote:
8/4/15
Sarah Smet
,
Michael Doube
2
8/4/15
How much RAM do I need ?
Dear Sarah, Could you please tell us: - Your operating system - Java version (Help > About ImageJ)
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How much RAM do I need ?
Dear Sarah, Could you please tell us: - Your operating system - Java version (Help > About ImageJ)
8/4/15
David PASTORINO
, …
Nicolas ANNE-ARCHARD
5
7/23/15
ROI with holes - Problem using the Trabecular Thickness and Spacing measurement
Thanks for your fast answer! Good and functional idea! You've understood correctly! Feeling a bit
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ROI with holes - Problem using the Trabecular Thickness and Spacing measurement
Thanks for your fast answer! Good and functional idea! You've understood correctly! Feeling a bit
7/23/15
Michael Doube
7/23/15
Job opening: Research Software Engineer for BoneJ
BoneJ2 - full-featured next-generation BoneJ for standardised bone image analysis http://jobs.rvc.ac.
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Job opening: Research Software Engineer for BoneJ
BoneJ2 - full-featured next-generation BoneJ for standardised bone image analysis http://jobs.rvc.ac.
7/23/15
Michael Doube
6/17/15
BoneJ2 development funded by Wellcome Trust
Dear all, It is my great pleasure to announce that BoneJ has just received backing from the Wellcome
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BoneJ2 development funded by Wellcome Trust
Dear all, It is my great pleasure to announce that BoneJ has just received backing from the Wellcome
6/17/15
Mahmoudi Sidi Ahmed
,
Michael Doube
2
6/15/15
ImageJ 3D Viewer
Hi Sidi, Thanks for pointing this out. I've copied a version of 3D viewer from my laptop onto the
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ImageJ 3D Viewer
Hi Sidi, Thanks for pointing this out. I've copied a version of 3D viewer from my laptop onto the
6/15/15
Drew Best
6/10/15
How to measure anisotropy in HR-PCT dicoms?
Hi folks, Thanks for any help with this. Here's what I'm trying to do: I have image stacks of
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How to measure anisotropy in HR-PCT dicoms?
Hi folks, Thanks for any help with this. Here's what I'm trying to do: I have image stacks of
6/10/15
Anna
, …
michae...@gmail.com
4
5/29/15
Validate the Second Moment of Area by using known geometry
Check your pixel calibration. On Fri May 29 17:38:24 2015 GMT+0100, Shafini Mohamad wrote: > Dear
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Validate the Second Moment of Area by using known geometry
Check your pixel calibration. On Fri May 29 17:38:24 2015 GMT+0100, Shafini Mohamad wrote: > Dear
5/29/15
Anna
,
Michael Doube
3
5/22/15
Second Moment of Area
Dear Michael, Thanks for your help! best regards Ann On 22 May 2015 at 08:14, Michael Doube <
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Second Moment of Area
Dear Michael, Thanks for your help! best regards Ann On 22 May 2015 at 08:14, Michael Doube <
5/22/15
arun kumar
, …
Michael Doube
3
5/22/15
Gabor filter for Batch Processing
Hi Kumar, You should state what you are trying to do and what your problem is. This information is
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Gabor filter for Batch Processing
Hi Kumar, You should state what you are trying to do and what your problem is. This information is
5/22/15
Behdad Pouran
,
Michael Doube
2
5/6/15
MIL Fabric tensors
Hi Behdad, > After activating the record eigen in anisotropy window I received a few numbers
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MIL Fabric tensors
Hi Behdad, > After activating the record eigen in anisotropy window I received a few numbers
5/6/15
Mahmoudi Sidi Ahmed
,
Michael Doube
2
4/27/15
BMD computation. Which Phantom ?
Dear Sidi, You should use phantoms that are appropriate to the materials you are imaging and the
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BMD computation. Which Phantom ?
Dear Sidi, You should use phantoms that are appropriate to the materials you are imaging and the
4/27/15
Emily Yap
, …
Michael Doube
5
4/24/15
Displaying 3D volume using Volume Fraction surface algorithm
Hi Emily, To comment further I'd really need to know: ImageJ / Fiji version (Help > About
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Displaying 3D volume using Volume Fraction surface algorithm
Hi Emily, To comment further I'd really need to know: ImageJ / Fiji version (Help > About
4/24/15
Anna
,
Michael Doube
3
4/22/15
segmentation: thresholding method
Dear Michael, Many thanks! I've tried it and the bone now is 255 and the background=0. It
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segmentation: thresholding method
Dear Michael, Many thanks! I've tried it and the bone now is 255 and the background=0. It
4/22/15
Anna
,
Ali Ghasem Zadeh
3
4/17/15
BV/TV and Tissue Mineral Density
Thanks Ali. Could we use ImageJ to measure tissue mineral density? best, Anna On Tuesday, 14 April
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BV/TV and Tissue Mineral Density
Thanks Ali. Could we use ImageJ to measure tissue mineral density? best, Anna On Tuesday, 14 April
4/17/15
Mahmoudi Sidi Ahmed
,
michae...@gmail.com
2
4/15/15
Tb. N with Bone J
Conn.D is better than Tb.N, because Tb.N makes some assumptions about the underlying geometry which
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Tb. N with Bone J
Conn.D is better than Tb.N, because Tb.N makes some assumptions about the underlying geometry which
4/15/15