how upload the software 'blink'

[Meki Shehabu]

i installed blink excuatable program file in santos Linux installed in a server

I put 'InstallLog_08-08-2018T18-21-30.log' and 'Linux_fullInstall_meng.gif' files in a folder "myBLINK' together with the demo data

then I run;

blink --gwas --file myData --binary

I found the following;

-bash: blink: command not found

I also tried; module load blink, but now working

how I proceed?

Meki

[Meng Huang]

I think you can try ./blink as you can only use it as local executable file.

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[Meki Shehabu]

Thank you Meng Huang!

yes that was important, but now the following error appears;

[mshehabu@hpc myBLINK]$ ./blink --gwas --file myData --binary

./blink: line 1: [08-08-2018T18:21:31][1069]Starting: command not found

./blink: line 2: [08-08-2018T18:21:31][1070]Retrieving: command not found

./blink: line 3: [08-08-2018T18:21:31][79]Detected: command not found

./blink: line 4: [08-08-2018T18:21:31][86]Detected: command not found

./blink: line 5: [08-08-2018T18:21:31][93]Detected: command not found

./blink: line 6: [08-08-2018T18:21:31][113]Logged: command not found

./blink: line 7: [08-08-2018T18:21:31][136]---------------------------------------------------------------------------------: command not found

./blink: line 8: [08-08-2018T18:22:05][138]---------------------------------------------------------------------------------: command not found

./blink: line 9: [08-08-2018T18:22:07][1095]EULA: command not found

./blink: line 10: [08-08-2018T18:22:08][1117]Non: command not found

./blink: line 11: syntax error near unexpected token `('

./blink: line 11: `[08-08-2018T18:22:37][1129]USERMODE_INSTALL: 1. (0: root user; 1: non-root user '

On Friday, April 3, 2020 at 7:59:13 PM UTC+3, Meng Huang wrote:

I think you can try ./blink as you can only use it as local executable file.

On Fri, Apr 3, 2020 at 12:56 PM Meki Shehabu <mshe...@gmail.com> wrote:

i installed blink excuatable program file in santos Linux installed in a server

I put 'InstallLog_08-08-2018T18-21-30.log' and 'Linux_fullInstall_meng.gif' files in a folder "myBLINK' together with the demo data

then I run;

blink --gwas --file myData --binary

I found the following;

-bash: blink: command not found

I also tried; module load blink, but now working

how I proceed?

Meki

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[Meki Shehabu]

I dowloaded the 'blink_linux' file (https://github.com/Menggg/BLINK/blob/master/blink_linux) and put it into the folder. it seems working with the following 

./blink_linux\ \(1\) --gwas --file myData --numeric --trait 0

but still I am not sure about the result, is there the P-value result for the demo data?

Thanks