what is the error called "Cannot get wwi!" in BLINK -C

zhiqiang chen

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Feb 6, 2023, 7:21:49 PM2/6/23

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Hi Huang,

I am running BLINK-C recently. For your demo data, the scripts work well. But When I used my own data, some errors come out.

Could you check the error message below and give some feedback?

Cheers

Zhiqiang

Loading init_opencl version 2022.2.0
**************************
* BLINK v0.01 start *
**************************
****************************************************************
* BLINK is written by Meng Huang and designed by Zhiwu Zhang *
* Please visit zzlab.net to get more information about BLINK *
****************************************************************

Input arguments: --file Allsamples.indel.bia.Qual20.DP.mac5.miss0.3.HWE.imputed.maf0.05.LDpruned.Haggenas --compress 1 --plink
one cycle include 1000 SNPs inside!

The number of traits = 1
--------
In PLINK files
number of markers is 222767356
number of individuals is 523
--------
plink_mode is 1

==The compressed binary files have been created successfully!==
**************************
* BLINK v0.01 start *
**************************
****************************************************************
* BLINK is written by Meng Huang and designed by Zhiwu Zhang *
* Please visit zzlab.net to get more information about BLINK *
****************************************************************

Input arguments: --gwas --file Allsamples.indel.bia.Qual20.DP.mac5.miss0.3.HWE.imputed.maf0.05.LDpruned.Haggenas --plink --trait 17
one cycle include 10000 SNPs inside!

The number of traits = 1
--------
In PLINK files
number of markers is 222767356
number of individuals is 523
--------
plink_mode is 1

The number of traits = 37

The number of marker = 222767356
--------
The number of individual = 0
The number of marker = 222767356
--------
The number of covariates = 3

=====================================
na_length=0
===DiscArea_20===
Get yy!
Get yw and ww!
Cannot get wwi!
Can't open the Pvalue file!
All the time consumption = 2923 seconds
~

Rômulo Carleial

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Dec 10, 2024, 2:37:19 PM12/10/24

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Did you find out what the issue was? I am having the same problem

zheng

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Dec 16, 2024, 10:09:44 PM12/16/24

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hello, did you find out what the issue was?

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