methylation count

[Barbara Zambiasi Martinelli]

Dear Yaping,

I need an output (.bed or .bedgraph) with the following columns:

<chromosome> <start position> <end position> <methylation percentage> <count methylated> <count non-methylated>

However, I'm not having success to extract the <count methylated> <count non-methylated> by using the scripts provided.

Would you have a way to do it? Thank you in advance.

Best regards,

Barbara