Ambimeter error

[Isabel Elliott]

Hi,

I am trying to use ambimeter in raw with the .out files generated from my IFT GNOM analysis but I've been getting the same error for numerous datasets: 

An unexpected error has occurred, please report it to the developers.

System: macOS-15.0-arm64-arm-64bit
RAW version: 2.3.0
Prebuilt: True
ATSAS version: 4.0.1

Error:
Traceback (most recent call last):

  File "bioxtasraw/RAW.py", line 11042, in _onPopupMenuChoice

  File "bioxtasraw/RAW.py", line 1239, in showAmbiFrame

IndexError: list index out of range

Do you think this is likely a problem with my raw installation or with my ATSAS installation, or alternatively an issue with my .out files?

Many thanks,

Isabel 

[Jesse Hopkins]

Hi Isabel,

Can you send me one of the .out files you're getting the error with so I can test it?

All the best.

- Jesse

----

Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

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[Isabel Elliott]

Hi Jesse,

Thanks for your reply - do you have an email so I can send to you off the list?

Best wishes,

Isabel

[Jesse Hopkins]

Hi Isabel,

I checked and found that there's a bug with opening the ambimeter window in RAW when using ATSAS >=4.0. It has something to do with how RAW checks which version of ambimeter is being used, which they changed in ATSAS 4. For now, I can recommend a workaround. If you open the DAMMIF or DENSS windows and go to the results tab without running a reconstruction it will show the ambimeter results, without the same bug that prevents the main ambimeter window from opening.

I'll fix this bug in the next release (it's already fixed in the source on github).

All the best.

- Jesse

----

Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/d360e6e9-dc43-4bd8-8c4a-aca9bd7b4c4cn%40googlegroups.com.

[Isabel Elliott]

Hi Jesse,

Thank you very much for your response.

Best wishes,

Isabel