Exporting GNOM PDF files

[Alvin Chang]

Hi everyone,

I was just wondering if there was a way to export GNOM PDF data into a csv or text file.

I am able to save the data as an image file from BioXTAS RAW. When I export as an out file and open the out file, I can also only export the data as an image file.

Just wondering because I was wanting to plot the data using ORIGIN.

Thanks for the help!

Best,

Alvin

[Jesse Hopkins]

Hi Alvin,

The .out files are just a text format. You can open them in a text editor (e.g. Notepad on windows), import them into excel as space separated values, etc. I don't use Origin, but I'm guessing you can either import them directly as space separated text, or you could import it into excel, clean up the formatting, and then save that as, e.g., a csv, and import that into Origin.

All the best.

- Jesse

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Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

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[Richard Gillilan]

I’ve got a simple python code to parse the .out files for plotting if anyone wants it.

Richard

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[Jesse Hopkins]

If you want to use python you could use the RAW API to load the .out file, and then get the parsed results from there. It would be pretty easy. You can see an example here of how you would load an IFT and retrieve the P(r) function and the fit data as numpy arrays in about 12 lines of code:

https://bioxtas-raw.readthedocs.io/en/latest/api/getting_started.html#working-with-ifts

All the best.

- Jesse

----

Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/12C07F84-3400-4D59-AEE7-4283F2F44990%40cornell.edu.

[Alvin Chang]

Hi Jesse and Richard,

Thanks for the helpful responses!

Thanks,

Alvin