GNOM running error

[Rahul Singh]

Hi I am facing the following error while running GNOM 

Error

"

An unexpected error has occurred, please report it to the developers.
System: Windows-10-10.0.22631-SP0
RAW version: 2.3.0
Prebuilt: True
ATSAS version: 3.2.1

Error:
Traceback (most recent call last):

  File "bioxtasraw\RAWAnalysis.py", line 4912, in onSaveInfo

KeyError: '134'

"

[Jesse Hopkins]

Hi Rahul,

Can you send me the dataset that caused the issue so I can test it on my side?

All the best.

- Jesse

----

Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

--
You received this message because you are subscribed to the Google Groups "BioXTAS RAW" group.
To unsubscribe from this group and stop receiving emails from it, send an email to bioxtas_raw...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/c0f5826c-758e-479f-a196-f194059f30fcn%40googlegroups.com.

[Rahul Singh]

The images associated with the error are attached for reference.

Thanks

--
You received this message because you are subscribed to the Google Groups "BioXTAS RAW" group.
To unsubscribe from this group and stop receiving emails from it, send an email to bioxtas_raw...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/c0f5826c-758e-479f-a196-f194059f30fcn%40googlegroups.com.

--

Rahul Singh (Ph.D.)

Scientific Officer (E) 

Macromolecular Crystallography Section,

Beamline Development & Application Section,
Bhabha Atomic Research Center (BARC), Mumbai, India

Present address: G7, Indus-2, ISUD, RRCAT, Indore-452013, MP, India
Alternative-ID: rah...@rrcat.gov.in, 
Phone No.: +91-731-244-2569/ +91-731-244-2567/ +91-731-244-2175

 

[Jesse Hopkins]

Hi Rahul,

Thanks for sending those images. This is a known bug in RAW, which I will fix in the next release. If a scattering profile contains duplicate data points, GNOM reports that as an error (the text says "warning: skipping duplicate . . . ", but it's reported in the same way an error is from GNOM), and so RAW thinks it's failed. 

If you want to remove the error, you could rebin the profile in RAW to eliminate any duplicate data points (just rebin by a factor of 2, for example) and then GNOM should work without complaint.

All the best.

- Jesse

----

Jesse Hopkins, PhD

Deputy Director

BioCAT, Sector 18

Advanced Photon Source

To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/CALmdb3n1RJKp1qgFc5ECPthRAu5MbXgAzAwtGmV5y9CFBY2COg%40mail.gmail.com.

[Rahul Singh]

It worked,

Thanks for the prompt feedback.

Regards

To view this discussion on the web visit https://groups.google.com/d/msgid/bioxtas_raw/CAGRN2W0dDBu3cTqgz%3DCmwqt5_Gb6iAHOkPb_L%3DQ_-isqpc5LmA%40mail.gmail.com.