BioXTAS RAW

Contact owners and managers

1–30 of 108

Welcome to the BioXTAS RAW google group. This group is intended to provide a centralized location for user questions, bug reports, etc. It will also provide announcements about the software package, such as new releases.

Documentation for RAW is available from: https://bioxtas-raw.readthedocs.io/

If you have a bug report, please include: system, version number, installation type (package or from source), the appropriate error messages and sample data so we can recreate the bug. That will enable us to find and solve the problem as quickly as possible.

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jesse.b...@gmail.com

May 20

Request for feedback on NIH program that funds RAW development

Dear RAW users, As you may know, development of RAW is funded by the NIH's Mature Synchrotron

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Request for feedback on NIH program that funds RAW development

Dear RAW users, As you may know, development of RAW is funded by the NIH's Mature Synchrotron

May 20

Emily Herrell, Jesse Hopkins3

Apr 8

Unexpected error during DAMMIN_slow

Hi Jesse, I changed the name of the .out file and took out any "." also made sure the

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Unexpected error during DAMMIN_slow

Hi Jesse, I changed the name of the .out file and took out any "." also made sure the

Apr 8

Tina Logonder, Jesse Hopkins5

Apr 8

Thank you, Jese, for all the recommendations. petek, 5. april 2024 ob 23:45:26 UTC+2 je oseba Jesse

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Thank you, Jese, for all the recommendations. petek, 5. april 2024 ob 23:45:26 UTC+2 je oseba Jesse

Apr 8

jesse.b...@gmail.com

Feb 12

RAW 2.2.2 released

I'm pleased to announce the release of RAW version 2.2.2. Installation links are available here:

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RAW 2.2.2 released

I'm pleased to announce the release of RAW version 2.2.2. Installation links are available here:

Feb 12

jesse.b...@gmail.com

Jan 31

New RAW paper available

Hi all, A new open access paper on RAW has been published: https://scripts.iucr.org/cgi-bin/paper?

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New RAW paper available

Hi all, A new open access paper on RAW has been published: https://scripts.iucr.org/cgi-bin/paper?

Jan 31

Feng Yu, … Jesse Hopkins3

Jan 17

Question about hydration layer and normalization for BIFT in RAW

Hi Feng Yu, I'll add to what Richard said. The P(r) function will include the hydration layer if

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Question about hydration layer and normalization for BIFT in RAW

Hi Feng Yu, I'll add to what Richard said. The P(r) function will include the hydration layer if

Jan 17

jesse.b...@gmail.com

Jan 6

RAW is available as a debian package

Hi all, It recently came to my attention that RAW is available as a package through Debian: https://

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RAW is available as a debian package

Hi all, It recently came to my attention that RAW is available as a package through Debian: https://

Jan 6

NIYAZ AHMAD, Jesse Hopkins2

12/6/23

not able to plot the files

Hi Niyaz, The problem seems to be in the file format. If you look at the file around line 500 (see

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not able to plot the files

Hi Niyaz, The problem seems to be in the file format. If you look at the file around line 500 (see

12/6/23

jesse.b...@gmail.com

12/3/23

Sorry about the spam

Hi folks, Sorry about the recent spam to the group. I've changed some of the moderation sessions,

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Sorry about the spam

Hi folks, Sorry about the recent spam to the group. I've changed some of the moderation sessions,

12/3/23

何承鑫, Jesse Hopkins11

10/6/23

Issues with Xenocs 2.0 Scattering Data in EDF and .nxs Formats

Hi Jesse, Thanks for your generous helps. I will try to understand your guide. Thank you again.

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Issues with Xenocs 2.0 Scattering Data in EDF and .nxs Formats

Hi Jesse, Thanks for your generous helps. I will try to understand your guide. Thank you again.

10/6/23

jesse.b...@gmail.com

10/3/23

New RAW manuscript available

Hi folks, There's a new RAW manuscript available on bioRxiv: https://www.biorxiv.org/content/

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New RAW manuscript available

Hi folks, There's a new RAW manuscript available on bioRxiv: https://www.biorxiv.org/content/

10/3/23

Tuyen Nguyen, Richard Gillilan2

9/28/23

Issue with software download

This link works fine for me: https://sourceforge.net/projects/bioxtasraw/ Maybe try again. Perhaps

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Issue with software download

This link works fine for me: https://sourceforge.net/projects/bioxtasraw/ Maybe try again. Perhaps

9/28/23

Alexandra Perry, Jesse Hopkins3

9/10/23

Error message when trying to use Align(SUPCOMB/CIFSUP)

Thank you so much for your help This is working now Regards Alexandra :) On Monday, September 11,

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Error message when trying to use Align(SUPCOMB/CIFSUP)

Thank you so much for your help This is working now Regards Alexandra :) On Monday, September 11,

9/10/23

Nicholas David Clark, Jesse Hopkins5

8/31/23

Problem Dataset

Should anyone run into a similar issue (Panel A), Jesse figured out that the main issue was incorrect

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Problem Dataset

Should anyone run into a similar issue (Panel A), Jesse figured out that the main issue was incorrect

8/31/23

Gianluca Cioci, Jesse Hopkins3

8/31/23

help for processing

Hi Jesse, thanks for the advice. I am new with RAW, but I have some experience using other programs.

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help for processing

Hi Jesse, thanks for the advice. I am new with RAW, but I have some experience using other programs.

8/31/23

Sabrina Davies, Jesse Hopkins6

8/25/23

Problem with SEC-SAXS linear buffer subtraction

Hi Jesse, Cool thanks heaps - baseline looks good now! I've had a go and I think I have REGALS

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Problem with SEC-SAXS linear buffer subtraction

Hi Jesse, Cool thanks heaps - baseline looks good now! I've had a go and I think I have REGALS

8/25/23

7/25/23

Re: [Bioxtas Raw] Windows; Version 2.2.1; Black background Plot Panel

Hi Alexandra, It's hard to say without more information on what you're seeing and what OS you

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Re: [Bioxtas Raw] Windows; Version 2.2.1; Black background Plot Panel

Hi Alexandra, It's hard to say without more information on what you're seeing and what OS you

7/25/23

XiaoLan Yao, … Jesse Hopkins4

7/12/23

Error message when starting RAW on Mac

Hi Xiolan, Strange. I don't have an Apple Silicon mac running MacOS 13.4 right now, so I can'

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Error message when starting RAW on Mac

Hi Xiolan, Strange. I don't have an Apple Silicon mac running MacOS 13.4 right now, so I can'

7/12/23

jesse.b...@gmail.com

6/22/23

RAW 2.2.1 released

I'm pleased to announce the release of RAW version 2.2.1. Installation links are available here:

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RAW 2.2.1 released

I'm pleased to announce the release of RAW version 2.2.1. Installation links are available here:

6/22/23

Pernille sønderby, … Jesse Hopkins5

6/20/23

RAW series vs chromixs for SEC SAXS

Hi Jesse and Richard, I did get it working similar to Chromixs. It is simply confusing to see data so

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RAW series vs chromixs for SEC SAXS

Hi Jesse and Richard, I did get it working similar to Chromixs. It is simply confusing to see data so

6/20/23

SAZANAMI YAMANASHI, Jesse Hopkins2

6/20/23

Maybe there is a bug.

Hi, Thanks for the bug report. I've been able to verify that this is indeed a bug in the prebuilt

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Maybe there is a bug.

Hi, Thanks for the bug report. I've been able to verify that this is indeed a bug in the prebuilt

6/20/23

Ankur Singh, jesse.b...@gmail.com15

6/9/23

Bioxtas 2.1.4- Gdkpixbuf issue after installation

The 2.2.0 release fixes both of these issues with the prebuilt debian installer. - Jesse On Wednesday

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Bioxtas 2.1.4- Gdkpixbuf issue after installation

The 2.2.0 release fixes both of these issues with the prebuilt debian installer. - Jesse On Wednesday

6/9/23

jesse.b...@gmail.com

6/9/23

RAW 2.2.0 released

I'm is pleased to announce the release of RAW version 2.2.0. Installation links are available

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RAW 2.2.0 released

I'm is pleased to announce the release of RAW version 2.2.0. Installation links are available

6/9/23

Rahul Singh, Jesse Hopkins4

5/26/23

Hi Rahul, I couldn't reproduce the error with my test data, so it may be something particular to

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Hi Rahul, I couldn't reproduce the error with my test data, so it may be something particular to

5/26/23

Vandanashree Muralidharan, Jesse Hopkins2

3/24/23

Error during DENSS run

Hi Vandana, I need more information to troubleshoot this: - What version of RAW are you using? - What

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Error during DENSS run

Hi Vandana, I need more information to troubleshoot this: - What version of RAW are you using? - What

3/24/23

Vandanashree Muralidharan, Jesse Hopkins4

3/14/23

Error after installation

Hi Jesse, Thanks for the help, your suggestion helped after updating the language. Cheers, Vandana On

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Error after installation

Hi Jesse, Thanks for the help, your suggestion helped after updating the language. Cheers, Vandana On

3/14/23

Randy Polson, … Kimberly Vish11

2/7/23

bug "Unexpected error"

Hi Jesse, I am seeing the same issue and have downloaded RAW v2.1.4 and ATSAS v3.2.1 on MacOS 12.5.1.

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bug "Unexpected error"

Hi Jesse, I am seeing the same issue and have downloaded RAW v2.1.4 and ATSAS v3.2.1 on MacOS 12.5.1.

2/7/23

Vandanashree Muralidharan, … Jesse Hopkins9

9/25/22

converting data from nm to A

Sure, Thanks On Sun, Sep 18, 2022 at 7:08 PM Jesse Hopkins <jesse.b...@gmail.com> wrote:

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converting data from nm to A

Sure, Thanks On Sun, Sep 18, 2022 at 7:08 PM Jesse Hopkins <jesse.b...@gmail.com> wrote:

9/25/22

jesse.b...@gmail.com

9/2/22

RAW code moved to github

In order to take advantage of the more robust web-based collaboration tools, particularly in terms of

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RAW code moved to github

In order to take advantage of the more robust web-based collaboration tools, particularly in terms of

9/2/22

Lee Joon Kim, Jesse Hopkins4

8/23/22

Possible Bug: RAW 2.1.4 DENSS Custom Mode

Hi Jesse, Thanks so much for the fix! Best, LJ On Tuesday, August 23, 2022 at 9:15:35 AM UTC-7 jesse.

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Possible Bug: RAW 2.1.4 DENSS Custom Mode

Hi Jesse, Thanks so much for the fix! Best, LJ On Tuesday, August 23, 2022 at 9:15:35 AM UTC-7 jesse.

8/23/22

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