BTViewer
zuo
| Hi, I got a new problem for placing btp file on the website. what i did is following BioTapestryViewerDistribution-11-24-10.zip README.txt file to generate data.jar file and make changes in biotapestry.jnlp file. The files are in /var/www/view path. like ... /var/www/view$ ls -l total 3800 -rw-r--r-- 1 root root 3873326 2011-01-26 11:44 bioTapestryViewer.5.0.1.jar -rw-r--r-- 1 root root 4956 2011-01-26 11:43 tryhello.jar drwxr-xr-x 2 root root 4096 2011-01-26 11:51 webStart the tryhello.jar and modified jnlp file are attached. The jnlp file can be launched from web link automatically, but after showing bioTapestry image, no further responses, and java console says Java Web Start 1.6.0_22 ---------------------------------------------------- Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: org/systemsbiology/biotapestry/ui/dialogs/MultiSelectionPropertiesDialog at org.systemsbiology.biotapestry.ui.PopControl.<init>(PopControl.java:143) at org.systemsbiology.biotapestry.ui.SUPanel.<init>(SUPanel.java:298) at org.systemsbiology.biotapestry.app.CommonView.buildViewOnlyView(CommonView.java:1033) at org.systemsbiology.biotapestry.app.ViewerWindow.<init>(ViewerWindow.java:82) at org.systemsbiology.biotapestry.app.ViewerApplication.launch(ViewerApplication.java:130) at org.systemsbiology.biotapestry.app.ViewerApplication.access$100(ViewerApplication.java:44) at org.systemsbiology.biotapestry.app.ViewerApplication$2.run(ViewerApplication.java:103) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEvent(EventQueue.java:597) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Caused by: java.lang.ClassNotFoundException: org.systemsbiology.biotapestry.ui.dialogs.MultiSelectionPropertiesDialog at java.net.URLClassLoader$1.run(URLClassLoader.java:202) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:190) at com.sun.jnlp.JNLPClassLoader.findClass(JNLPClassLoader.java:332) at java.lang.ClassLoader.loadClass(ClassLoader.java:307) at java.lang.ClassLoader.loadClass(ClassLoader.java:248) ... 15 more any thing wrong with the jnlp configuration? or jar file path is misleading? the btp file is ok for BT editor. Kind Regards jié zu Email: po_...@yahoo.com Tel: +44 (0)1865 222470 Fax: +44 (0)1865 222501 |
William Longabaugh
A dependency snuck into the Viewer that I didn't catch.
The best near-term solution is to use the Editor
jar file (sBioTapestry-J15-V5.0.1.jar) instead of the
viewer jar. It is larger and takes longer to download,
but I think it should do the trick until I roll 5.0.2 out...
-- Bill
> ji� zu
>
> Email: po_...@yahoo.com
> Tel: +44 (0)1865 222470
> Fax: +44 (0)1865 222501
>
>
>
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Paul Rigor
Paul
zuo wrote:
jié zu
Email: po_...@yahoo.com
Tel: +44 (0)1865 222470
Fax: +44 (0)1865 222501
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zuo
| Sorry to hear that, anyway, may I make it further ? Actually I need to use Editor , not pure Viewer, as I want users to generate BTP file dynamically from our DB and edit the result immediately. So Editor would be a better option. then new trick comes up . i used sBioTapestry-J15-V5.0.1.jar but not bioTapestryViewer.5.0.1.jar in JNLP file. After launch, java Console report error. |
Java Web Start 1.6.0_22 ---------------------------------------------------- |
| Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at org.systemsbiology.biotapestry.ui.DisplayOptions.<init>(DisplayOptions.java:172) at org.systemsbiology.biotapestry.ui.DisplayOptionsManager.<init>(DisplayOptionsManager.java:222) at org.systemsbiology.biotapestry.ui.DisplayOptionsManager.getMgr(DisplayOptionsManager.java:199) at org.systemsbiology.biotapestry.app.CommonView.buildCore(CommonView.java:1176) at org.systemsbiology.biotapestry.app.CommonView.buildViewOnlyView(CommonView.java:1050) |
at org.systemsbiology.biotapestry.app.ViewerWindow.<init>(ViewerWindow.java:82) at org.systemsbiology.biotapestry.app.ViewerApplication.launch(ViewerApplication.java:130) at org.systemsbiology.biotapestry.app.ViewerApplication.access$100(ViewerApplication.java:44) at org.systemsbiology.biotapestry.app.ViewerApplication$2.run(ViewerApplication.java:103) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEvent(EventQueue.java:597) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) |
| Hopefully this bug is easy to catch. many thanks. Kind Regards jié zu |
|
Email: po_...@yahoo.com Tel: +44 (0)1865 222470 Fax: +44 (0)1865 222501 |
| --- On Wed, 1/26/11, William Longabaugh <wlong...@systemsbiology.org> wrote: |
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William Longabaugh
5.0.2. Thanks for catching it.
I the meantime, since you want to run the Editor anyway,
specify the Editor entry point in your jnlp file:
<application-desc
main-class="org.systemsbiology.biotapestry.app.EditorApplication">
This should workaround the Viewer bug you uncovered.
-- Bill
> ji� zu
>
> Email: po_...@yahoo.com
> Tel: +44 (0)1865 222470
> Fax: +44 (0)1865 222501
>
> --- On *Wed, 1/26/11, William Longabaugh
> > ji� zu
> > Email: po_...@yahoo.com </mc/compose?to=po_...@yahoo.com>
> > Tel: +44 (0)1865 222470
> > Fax: +44 (0)1865 222501
> >
> >
> >
> > -- You received this message because you are subscribed to the
> Google Groups "BioTapestry-users" group.
> > To post to this group, send email to
> biotapes...@googlegroups.com
> </mc/compose?to=biotapes...@googlegroups.com>.
> > To unsubscribe from this group, send email to
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> </mc/compose?to=unsub...@googlegroups.com>.
> > For more options, visit this group at
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>
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>
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