Groups
Conversations
All groups and messages
Send feedback to Google
Help
Training
Sign in
Groups
BioTapestry-users
Conversations
About
Groups keyboard shortcuts have been updated
Dismiss
See shortcuts
BioTapestry-users
1–30 of 79
BioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks; it is available at
www.BioTapestry.org
. This group is for providing user support to users of BioTapestry.
Mark all as read
Report group
0 selected
Jeremy Sandler
, …
Malcolm Cook
4
2/1/24
Adding genes with alternate capitalizations to the same model
Might it suit your purposes to relabel the genes as "<geneName>/<organism>"
unread,
Adding genes with alternate capitalizations to the same model
Might it suit your purposes to relabel the genes as "<geneName>/<organism>"
2/1/24
Georgios Argyris
,
Bill Longabaugh
2
8/10/20
Download the models of Biotapestry repository
Hello. Sorry for the delay in responding. The .btp files are unfortunately not available for download
unread,
Download the models of Biotapestry repository
Hello. Sorry for the delay in responding. The .btp files are unfortunately not available for download
8/10/20
Ayush Aggarwal
,
William Longabaugh
5
9/19/19
Biotapestry not running on windows 10
Hi Bill This one is working perfectly fine. Thanks a lot! On Wednesday, September 18, 2019 at 5:53:54
unread,
Biotapestry not running on windows 10
Hi Bill This one is working perfectly fine. Thanks a lot! On Wednesday, September 18, 2019 at 5:53:54
9/19/19
Vidhya Munnamalai
,
William Longabaugh
3
3/6/19
intercellular node outside a region
Holy cannoli! It worked! Thanks for the quick response Bill! Trying to use this to and put a review
unread,
intercellular node outside a region
Holy cannoli! It worked! Thanks for the quick response Bill! Trying to use this to and put a review
3/6/19
Zachery Mielko
,
Bill Longabaugh
2
1/17/19
S. purpuratus Endomesoderm and Ectoderm btp files
Just saw this post, I don't know how it slipped through without my noticing. Sorry. For future
unread,
S. purpuratus Endomesoderm and Ectoderm btp files
Just saw this post, I don't know how it slipped through without my noticing. Sorry. For future
1/17/19
ScottT
,
Bill Longabaugh
2
1/17/19
Windows Download File
Thanks for the report. I also had the problem just now, where the download stalled and did not move
unread,
Windows Download File
Thanks for the report. I also had the problem just now, where the download stalled and did not move
1/17/19
joness...@gmail.com
,
William Longabaugh
2
5/18/18
GRN with RNA-seq data
Hello: BioTapestry is not designed to infer a network from expression data, but to visualize and
unread,
GRN with RNA-seq data
Hello: BioTapestry is not designed to infer a network from expression data, but to visualize and
5/18/18
Ruth Ashery-Padan
,
William Longabaugh
2
5/8/16
question on presentation of the network
Ruth: At present, there is no quick display option or model option to disable the display of links
unread,
question on presentation of the network
Ruth: At present, there is no quick display option or model option to disable the display of links
5/8/16
Bill Longabaugh
9/22/14
BioTapestry Version 7 Now Released!
BioTapestry Version 7.0.0 has just been released! Download it or try it via Java Web Start at http://
unread,
BioTapestry Version 7 Now Released!
BioTapestry Version 7.0.0 has just been released! Download it or try it via Java Web Start at http://
9/22/14
Hamid Bolouri
4/8/14
Re: [BioTapestry-users] Digest for biotapestry-users@googlegroups.com - 1 update in 1 topic
hilarious! Glad your HTML5 Canvas version is coming. Hamid On 4/8/14, biotapestry-users@googlegroups.
unread,
Re: [BioTapestry-users] Digest for biotapestry-users@googlegroups.com - 1 update in 1 topic
hilarious! Glad your HTML5 Canvas version is coming. Hamid On 4/8/14, biotapestry-users@googlegroups.
4/8/14
Bill Longabaugh
4/7/14
Forcing Mac Mavericks to Launch a Viewer
Apple (and Oracle) are making it increasingly difficult to launch the Java WebStart BioTapestry
unread,
Forcing Mac Mavericks to Launch a Viewer
Apple (and Oracle) are making it increasingly difficult to launch the Java WebStart BioTapestry
4/7/14
Bill Longabaugh
6/21/13
New 06/2013 Apple Java 6 Update is Bad News
The Java 6 update that Apple posted this week is breaking all sorts of Java programs, eg Cytoscape
unread,
New 06/2013 Apple Java 6 Update is Bad News
The Java 6 update that Apple posted this week is breaking all sorts of Java programs, eg Cytoscape
6/21/13
William Longabaugh
,
M. Faridounnia
7
5/20/13
Mac Users: Setting Java Preferences to Get Around Java 6 Bug
Ok, your screen capture shows that you get the error when the cmview.sh wrapper script tries to run /
unread,
Mac Users: Setting Java Preferences to Get Around Java 6 Bug
Ok, your screen capture shows that you get the error when the cmview.sh wrapper script tries to run /
5/20/13
Bill Longabaugh
12/17/12
New BioTapestry Version 6 Just Released!
Version 6.0.0 has just been released! It introduces a number of new features, mostly related to
unread,
New BioTapestry Version 6 Just Released!
Version 6.0.0 has just been released! It introduces a number of new features, mostly related to
12/17/12
Bill Longabaugh
2
11/12/12
Problem with Downloadable Executable on the Mac
Another workaround, instead of using Java WebStart, is to use the "open" command with the -
unread,
Problem with Downloadable Executable on the Mac
Another workaround, instead of using Java WebStart, is to use the "open" command with the -
11/12/12
Bill Longabaugh
11/5/12
BioFabric: Companion Software to BioTapestry Just Released; Web Site is Now Live
BioFabric is a new network visualization software tool that I have just released. It was built upon
unread,
BioFabric: Companion Software to BioTapestry Just Released; Web Site is Now Live
BioFabric is a new network visualization software tool that I have just released. It was built upon
11/5/12
Bill Longabaugh
9/6/12
Version 5.0.3 Released: Locally Installable Executables Now Available!
Version 5.0.3 has just been released. It only fixes one bug, but it was a painful one: you couldn
unread,
Version 5.0.3 Released: Locally Installable Executables Now Available!
Version 5.0.3 has just been released. It only fixes one bug, but it was a painful one: you couldn
9/6/12
Streit, Andrea
, …
zuo
6
12/21/11
problems running biotapestry
Thanks a lot for the clarification. Bill. We do have a local server for the expression image data. I
unread,
problems running biotapestry
Thanks a lot for the clarification. Bill. We do have a local server for the expression image data. I
12/21/11
David Molnar
,
Bill Longabaugh
2
11/10/11
Apply auto layouts > any --> crash
David: Darn. Thanks for the bug report. I have logged it. To be able to fix this, I will either need
unread,
Apply auto layouts > any --> crash
David: Darn. Thanks for the bug report. I have logged it. To be able to fix this, I will either need
11/10/11
Bill Longabaugh
, …
zuo
17
10/13/11
Possible Issues with 64-bit Java and 32-bit Java WebStart
Bill, apologises. it is my typo, when I generate btp files, leave a blank between '/' and
unread,
Possible Issues with 64-bit Java and 32-bit Java WebStart
Bill, apologises. it is my typo, when I generate btp files, leave a blank between '/' and
10/13/11
Silkiechicken
,
William Longabaugh
2
8/31/11
splash: recv failed when using latest version
Silkiechicken wrote: > So I get the java web start error of: "splash: recv failed" >
unread,
splash: recv failed when using latest version
Silkiechicken wrote: > So I get the java web start error of: "splash: recv failed" >
8/31/11
Bill Longabaugh
4/6/11
BioTapestry.org will be temporarily down for upcoming ISB move
The Institute for Systems Biology is moving to a new building over the next several days, and so www.
unread,
BioTapestry.org will be temporarily down for upcoming ISB move
The Institute for Systems Biology is moving to a new building over the next several days, and so www.
4/6/11
Bill Longabaugh
,
zuo
3
3/31/11
Version 5.0.2 Release Today
Unfortunately, a BTP format specification document does not exist, since the format really needs to
unread,
Version 5.0.2 Release Today
Unfortunately, a BTP format specification document does not exist, since the format really needs to
3/31/11
zuo
, …
William Longabaugh
18
1/28/11
headless batch mode
many thanks. I found solutions of launching Editor, that is ok now. about $GeneratorException class,
unread,
headless batch mode
many thanks. I found solutions of launching Editor, that is ok now. about $GeneratorException class,
1/28/11
zuo
, …
William Longabaugh
5
1/27/11
BTViewer
There is another bug in the Viewer. It will be fixed in 5.0.2. Thanks for catching it. I the meantime
unread,
BTViewer
There is another bug in the Viewer. It will be fixed in 5.0.2. Thanks for catching it. I the meantime
1/27/11
Paul Rigor
,
Bill Longabaugh
3
1/19/11
latest version runs out of memory using a fairly small network
I tested your network on the standard webstart version, doing both the root network and the child
unread,
latest version runs out of memory using a fairly small network
I tested your network on the standard webstart version, doing both the root network and the child
1/19/11
Bill Longabaugh
11/24/10
Version 5.0.1 Posted Today
Version 5 went live last Wednesday 11/17, and today a minor bugfix Version 5.0.1 was posted. The bugs
unread,
Version 5.0.1 Posted Today
Version 5 went live last Wednesday 11/17, and today a minor bugfix Version 5.0.1 was posted. The bugs
11/24/10
Bill Longabaugh
11/16/10
New V5 Release Scheduled for This Week
Just as a heads up, the new Version 5 should be up in the next couple of days if everything proceeds
unread,
New V5 Release Scheduled for This Week
Just as a heads up, the new Version 5 should be up in the next couple of days if everything proceeds
11/16/10
nantel
,
William Longabaugh
3
9/2/10
Creating a Network Viewer
Thanks, I failed to notice it because I searched the page for "Network Viewer". Doh! Andre
unread,
Creating a Network Viewer
Thanks, I failed to notice it because I searched the page for "Network Viewer". Doh! Andre
9/2/10
Kueh
,
William Longabaugh
2
8/27/10
retrieving interaction data from biotapestry file
Kueh: Thanks! The current way to get interaction data out is to navigate to a particular model and
unread,
retrieving interaction data from biotapestry file
Kueh: Thanks! The current way to get interaction data out is to navigate to a particular model and
8/27/10