bioprotocols

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Bioprotocols is a mailing list to coordinate development of a free and open standard for representation of biological protocols. Associated code lives at: http://bioprotocols.org/, and there is a Google Drive folder shared with mailing list members.

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Sep 30

COMBINE 2022 Breakout Sessions

Dear Bioprotocols Community, I would like to invite you to several breakout sessions during the

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COMBINE 2022 Breakout Sessions

Dear Bioprotocols Community, I would like to invite you to several breakout sessions during the

Sep 30

Sep 26

Fwd: Media Repository

My colleague Jet passed me this information about a media database: it contains not only ingredients,

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Fwd: Media Repository

My colleague Jet passed me this information about a media database: it contains not only ingredients,

Sep 26

Timothy Fallon2

Sep 6

Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options

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Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options

Sep 6

Aug 24

Congratulations to the new Bioprotocols leadership!

Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result

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Congratulations to the new Bioprotocols leadership!

Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result

Aug 24

Aug 22

Governance adopted, elections begin

Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of

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Governance adopted, elections begin

Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of

Aug 22

Aug 16

Final day of Bioprotocols Governance Vote

Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at

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Final day of Bioprotocols Governance Vote

Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at

Aug 16

Aug 10

Please vote on Bioprotocols Governance

Hello, all: We have finished the two-day governance vote preview period with no blocking issues

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Please vote on Bioprotocols Governance

Hello, all: We have finished the two-day governance vote preview period with no blocking issues

Aug 10

Aug 6

Nominations for Bioprotocols Election

Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three

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Nominations for Bioprotocols Election

Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three

Aug 6

Aug 6

Preview of Bioprotocols Governance Vote

As no major issues were raised with the proposed governance and all minor issues appear to have been

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Preview of Bioprotocols Governance Vote

As no major issues were raised with the proposed governance and all minor issues appear to have been

Aug 6

Aug 4

Draft governance for Bioprotocols WG

Reminder to all: please read and comment on the governance document ASAP. If there are no significant

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Draft governance for Bioprotocols WG

Reminder to all: please read and comment on the governance document ASAP. If there are no significant

Aug 4

Aug 2

Aug 9th PAML Scrum Canceled

Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the

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Aug 9th PAML Scrum Canceled

Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the

Aug 2

Jul 6

Bioprotocols Request for Information

Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for

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Bioprotocols Request for Information

Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for

Jul 6

Jul 5

Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links

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Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links

Jul 5

Apr 30

HARMONY 2022 Follow Up

Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY

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HARMONY 2022 Follow Up

Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY

Apr 30

Timothy Fallon, Jake Beal2

Apr 30

Demo miniprep protocol?

I'd say that if there are people who would commit to start using a PAML miniprep, then it could

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Demo miniprep protocol?

I'd say that if there are people who would commit to start using a PAML miniprep, then it could

Apr 30

Apr 29

Open Collective for Non-Profit Group Status

Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/

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Open Collective for Non-Profit Group Status

Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/

Apr 29

Apr 29

HARMONY Breakout Sessions

We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web

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HARMONY Breakout Sessions

We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web

Apr 29

Apr 27

Container Ontology and Container Server Breakout on Friday

From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY

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Container Ontology and Container Server Breakout on Friday

From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY

Apr 27

Apr 25

Invitation to meeting on Friday morning about the Container Ontology and its Server

One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me

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Invitation to meeting on Friday morning about the Container Ontology and its Server

One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me

Apr 25

S James Parsons Jr, Jake Beal2

Apr 21

Hi, James: PROV-O is a way of describing how things were created from other things. For example, we

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Hi, James: PROV-O is a way of describing how things were created from other things. For example, we

Apr 21

Apr 20

Bioprotocols as HARMONY 2022

Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the

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Bioprotocols as HARMONY 2022

Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the

Apr 20

Apr 7

Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY

Please contact me directly or respond on the list if you are interested in a session working with the

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Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY

Please contact me directly or respond on the list if you are interested in a session working with the

Apr 7

Jake Beal, … jeremy...@metamerlabs.io9

Mar 28

COMBINE registration open

As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping

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COMBINE registration open

As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping

Mar 28

Mar 15

Today's Status Meeting Canceled

Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away

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Today's Status Meeting Canceled

Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away

Mar 15

Mar 11

Container Ontology Meeting

Dear Community, We are starting our discussion of the container ontology developed by Robert Goldman

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Container Ontology Meeting

Dear Community, We are starting our discussion of the container ontology developed by Robert Goldman

Mar 11

Daniel Bryce, Jake Beal2

Mar 1

Status Meeting Recordings

Reminder to all as well: this mailing list is being kept low-traffic and focused on announcements.

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Status Meeting Recordings

Reminder to all as well: this mailing list is being kept low-traffic and focused on announcements.

Mar 1

Feb 23

Discussion of container ontology and representation of equipment

Per our last PAML weekly meeting, I have volunteered to organize a side meeting to discuss both the

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Discussion of container ontology and representation of equipment

Per our last PAML weekly meeting, I have volunteered to organize a side meeting to discuss both the

Feb 23

Daniel Bryce, Mike Fero2

Feb 17

PAML Editor alpha release

Hi Dan, This is great! We will take a look. Mike On Feb 17, 2022, at 11:00 AM, Daniel Bryce <

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PAML Editor alpha release

Hi Dan, This is great! We will take a look. Mike On Feb 17, 2022, at 11:00 AM, Daniel Bryce <

Feb 17

Timothy Fallon, … Jake Beal7

Feb 4

Workflow process modeling alternatives?

Please do send suggestions and comments by DM --- the manuscript is under review and will have

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Workflow process modeling alternatives?

Please do send suggestions and comments by DM --- the manuscript is under review and will have

Feb 4

Daniel Bryce, Emma Ganley2

Jan 25

PAML Status meeting starting soon

Hi Apologies but this clashes with another call for me today – I'll try to make the next meeting.

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PAML Status meeting starting soon

Hi Apologies but this clashes with another call for me today – I'll try to make the next meeting.

Jan 25

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