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bioprotocols
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bioprotocols
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Bioprotocols is a mailing list to coordinate development of a free and open standard for representation of biological protocols. Associated code lives at:
http://bioprotocols.org/
, and there is a Google Drive folder shared with mailing list members.
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Daniel Bryce
2
Feb 21
Office hours today at 10am CT
Hi Everyone, I'm going to make the office hours a recurring commitment for the foreseeable future
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Office hours today at 10am CT
Hi Everyone, I'm going to make the office hours a recurring commitment for the foreseeable future
Feb 21
Daniel Bryce
Jan 31
Scrum canceled today
Dear Group, I won't be able to attend our scrum for today. I have a conflict that I cannot move.
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Scrum canceled today
Dear Group, I won't be able to attend our scrum for today. I have a conflict that I cannot move.
Jan 31
Daniel Bryce
, …
mark doerr
4
12/13/22
Today’s scrum cancelled
Dear Dan, I cross fingers that the storms do not generate more damage - stay safe ! Next Tuesday I
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Today’s scrum cancelled
Dear Dan, I cross fingers that the storms do not generate more damage - stay safe ! Next Tuesday I
12/13/22
bioprotocols
11/7/22
Weekly Meeting -> Bi-weekly Meeting
Hi Everyone, We are shifting our normally weekly meeting to bi-weekly. We will not be meeting this
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Weekly Meeting -> Bi-weekly Meeting
Hi Everyone, We are shifting our normally weekly meeting to bi-weekly. We will not be meeting this
11/7/22
Jake Beal
10/8/22
Fwd: [BDAC-Info] IWBDA webinars -- Oct 12 and Oct 19
Hi, folks: IWBDA & BDAC are planning to host a couple of seminars related to protocols and
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Fwd: [BDAC-Info] IWBDA webinars -- Oct 12 and Oct 19
Hi, folks: IWBDA & BDAC are planning to host a couple of seminars related to protocols and
10/8/22
Daniel Bryce
2
10/6/22
COMBINE 2022 Breakout Sessions
Good Morning/Afternoon, We are starting the COMBINE 2022 session on developing the LabOP (PAML)
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COMBINE 2022 Breakout Sessions
Good Morning/Afternoon, We are starting the COMBINE 2022 session on developing the LabOP (PAML)
10/6/22
Daniel Bryce
10/3/22
Oct 4th Scrum Canceled
Dear Community, I'm canceling our Tuesday Scrum meeting this week. We have several people out,
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Oct 4th Scrum Canceled
Dear Community, I'm canceling our Tuesday Scrum meeting this week. We have several people out,
10/3/22
Jake Beal
9/26/22
Fwd: Media Repository
My colleague Jet passed me this information about a media database: it contains not only ingredients,
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Fwd: Media Repository
My colleague Jet passed me this information about a media database: it contains not only ingredients,
9/26/22
Timothy Fallon
2
9/6/22
PAML rename?
Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options
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PAML rename?
Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options
9/6/22
Jacob Beal
8/24/22
Congratulations to the new Bioprotocols leadership!
Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result
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Congratulations to the new Bioprotocols leadership!
Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result
8/24/22
Jacob Beal
2
8/22/22
Governance adopted, elections begin
Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of
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Governance adopted, elections begin
Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of
8/22/22
Jacob Beal
8/16/22
Final day of Bioprotocols Governance Vote
Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at
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Final day of Bioprotocols Governance Vote
Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at
8/16/22
Jacob Beal
8/10/22
Please vote on Bioprotocols Governance
Hello, all: We have finished the two-day governance vote preview period with no blocking issues
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Please vote on Bioprotocols Governance
Hello, all: We have finished the two-day governance vote preview period with no blocking issues
8/10/22
Jacob Beal
8/6/22
Nominations for Bioprotocols Election
Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three
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Nominations for Bioprotocols Election
Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three
8/6/22
Jacob Beal
8/6/22
Preview of Bioprotocols Governance Vote
As no major issues were raised with the proposed governance and all minor issues appear to have been
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Preview of Bioprotocols Governance Vote
As no major issues were raised with the proposed governance and all minor issues appear to have been
8/6/22
Jake Beal
4
8/4/22
Draft governance for Bioprotocols WG
Reminder to all: please read and comment on the governance document ASAP. If there are no significant
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Draft governance for Bioprotocols WG
Reminder to all: please read and comment on the governance document ASAP. If there are no significant
8/4/22
Daniel Bryce
8/2/22
Aug 9th PAML Scrum Canceled
Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the
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Aug 9th PAML Scrum Canceled
Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the
8/2/22
Daniel Bryce
2
7/6/22
Bioprotocols Request for Information
Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for
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Bioprotocols Request for Information
Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for
7/6/22
Timothy Fallon
7/5/22
KNIME & SiLA
Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links
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KNIME & SiLA
Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links
7/5/22
Daniel Bryce
4/30/22
HARMONY 2022 Follow Up
Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY
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HARMONY 2022 Follow Up
Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY
4/30/22
Timothy Fallon
,
Jake Beal
2
4/30/22
Demo miniprep protocol?
I'd say that if there are people who would commit to start using a PAML miniprep, then it could
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Demo miniprep protocol?
I'd say that if there are people who would commit to start using a PAML miniprep, then it could
4/30/22
Augustin Luna
4/29/22
Open Collective for Non-Profit Group Status
Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/
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Open Collective for Non-Profit Group Status
Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/
4/29/22
Daniel Bryce
2
4/29/22
HARMONY Breakout Sessions
We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web
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HARMONY Breakout Sessions
We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web
4/29/22
Robert Goldman
4/27/22
Container Ontology and Container Server Breakout on Friday
From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY
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Container Ontology and Container Server Breakout on Friday
From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY
4/27/22
Robert Goldman
4/25/22
Invitation to meeting on Friday morning about the Container Ontology and its Server
One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me
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Invitation to meeting on Friday morning about the Container Ontology and its Server
One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me
4/25/22
S James Parsons Jr
,
Jake Beal
2
4/21/22
W3C PROV-O
Hi, James: PROV-O is a way of describing how things were created from other things. For example, we
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W3C PROV-O
Hi, James: PROV-O is a way of describing how things were created from other things. For example, we
4/21/22
Daniel Bryce
4/20/22
Bioprotocols as HARMONY 2022
Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the
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Bioprotocols as HARMONY 2022
Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the
4/20/22
Robert Goldman
4/7/22
Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY
Please contact me directly or respond on the list if you are interested in a session working with the
unread,
Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY
Please contact me directly or respond on the list if you are interested in a session working with the
4/7/22
Jake Beal
, …
jeremy...@metamerlabs.io
9
3/28/22
COMBINE registration open
As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping
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COMBINE registration open
As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping
3/28/22
Daniel Bryce
3/15/22
Today's Status Meeting Canceled
Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away
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Today's Status Meeting Canceled
Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away
3/15/22