bioprotocols

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Bioprotocols is a mailing list to coordinate development of a free and open standard for representation of biological protocols. Associated code lives at: http://bioprotocols.org/, and there is a Google Drive folder shared with mailing list members.

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Feb 21

Office hours today at 10am CT

Hi Everyone, I'm going to make the office hours a recurring commitment for the foreseeable future

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Office hours today at 10am CT

Hi Everyone, I'm going to make the office hours a recurring commitment for the foreseeable future

Feb 21

Jan 31

Scrum canceled today

Dear Group, I won't be able to attend our scrum for today. I have a conflict that I cannot move.

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Scrum canceled today

Dear Group, I won't be able to attend our scrum for today. I have a conflict that I cannot move.

Jan 31

Daniel Bryce, … mark doerr4

12/13/22

Today’s scrum cancelled

Dear Dan, I cross fingers that the storms do not generate more damage - stay safe ! Next Tuesday I

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Today’s scrum cancelled

Dear Dan, I cross fingers that the storms do not generate more damage - stay safe ! Next Tuesday I

12/13/22

11/7/22

Weekly Meeting -> Bi-weekly Meeting

Hi Everyone, We are shifting our normally weekly meeting to bi-weekly. We will not be meeting this

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Weekly Meeting -> Bi-weekly Meeting

Hi Everyone, We are shifting our normally weekly meeting to bi-weekly. We will not be meeting this

11/7/22

10/8/22

Fwd: [BDAC-Info] IWBDA webinars -- Oct 12 and Oct 19

Hi, folks: IWBDA & BDAC are planning to host a couple of seminars related to protocols and

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Fwd: [BDAC-Info] IWBDA webinars -- Oct 12 and Oct 19

Hi, folks: IWBDA & BDAC are planning to host a couple of seminars related to protocols and

10/8/22

10/6/22

COMBINE 2022 Breakout Sessions

Good Morning/Afternoon, We are starting the COMBINE 2022 session on developing the LabOP (PAML)

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COMBINE 2022 Breakout Sessions

Good Morning/Afternoon, We are starting the COMBINE 2022 session on developing the LabOP (PAML)

10/6/22

10/3/22

Oct 4th Scrum Canceled

Dear Community, I'm canceling our Tuesday Scrum meeting this week. We have several people out,

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Oct 4th Scrum Canceled

Dear Community, I'm canceling our Tuesday Scrum meeting this week. We have several people out,

10/3/22

9/26/22

Fwd: Media Repository

My colleague Jet passed me this information about a media database: it contains not only ingredients,

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Fwd: Media Repository

My colleague Jet passed me this information about a media database: it contains not only ingredients,

9/26/22

Timothy Fallon2

9/6/22

Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options

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Hi PAML fans, From the weekly meeting, came up with a few options. You can see a table with options

9/6/22

8/24/22

Congratulations to the new Bioprotocols leadership!

Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result

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Congratulations to the new Bioprotocols leadership!

Congratulations, to the newly elected leadership of the Bioprotocols Working Group! The final result

8/24/22

8/22/22

Governance adopted, elections begin

Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of

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Governance adopted, elections begin

Reminder, everybody: the Bioprotocols WG elections are currently running and will close at the end of

8/22/22

8/16/22

Final day of Bioprotocols Governance Vote

Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at

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Final day of Bioprotocols Governance Vote

Today is the last day for the Bioprotocols WG adoption vote - if you have not voted yet, please do at

8/16/22

8/10/22

Please vote on Bioprotocols Governance

Hello, all: We have finished the two-day governance vote preview period with no blocking issues

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Please vote on Bioprotocols Governance

Hello, all: We have finished the two-day governance vote preview period with no blocking issues

8/10/22

8/6/22

Nominations for Bioprotocols Election

Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three

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Nominations for Bioprotocols Election

Per the proposed governance, the Bioprotocols Working Group will need to elect a Chair and three

8/6/22

8/6/22

Preview of Bioprotocols Governance Vote

As no major issues were raised with the proposed governance and all minor issues appear to have been

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Preview of Bioprotocols Governance Vote

As no major issues were raised with the proposed governance and all minor issues appear to have been

8/6/22

8/4/22

Draft governance for Bioprotocols WG

Reminder to all: please read and comment on the governance document ASAP. If there are no significant

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Draft governance for Bioprotocols WG

Reminder to all: please read and comment on the governance document ASAP. If there are no significant

8/4/22

8/2/22

Aug 9th PAML Scrum Canceled

Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the

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Aug 9th PAML Scrum Canceled

Hi Everyone, We will be canceling the SCRUM next week, but will resume the following week. In the

8/2/22

7/6/22

Bioprotocols Request for Information

Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for

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Bioprotocols Request for Information

Dear Bioprotocols Community, I'd like to send this RFI again as a reminder that our deadline for

7/6/22

7/5/22

Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links

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Hi all, I mentioned these in the scrum meeting but wasn't sure best way to follow up. These links

7/5/22

4/30/22

HARMONY 2022 Follow Up

Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY

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HARMONY 2022 Follow Up

Dear Bioprotocols Community, I'd like to thank everyone that joined us last week at the HARMONY

4/30/22

Timothy Fallon, Jake Beal2

4/30/22

Demo miniprep protocol?

I'd say that if there are people who would commit to start using a PAML miniprep, then it could

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Demo miniprep protocol?

I'd say that if there are people who would commit to start using a PAML miniprep, then it could

4/30/22

4/29/22

Open Collective for Non-Profit Group Status

Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/

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Open Collective for Non-Profit Group Status

Some slides that I presented last year on OpenCollective: https://docs.google.com/presentation/d/

4/29/22

4/29/22

HARMONY Breakout Sessions

We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web

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HARMONY Breakout Sessions

We are starting session 2 on steering the community and next steps in ten minutes at: https://us02web

4/29/22

4/27/22

Container Ontology and Container Server Breakout on Friday

From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY

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Container Ontology and Container Server Breakout on Friday

From Slack... @channel A quick note to say that we do have quorum, and I will set up a HARMONY

4/27/22

4/25/22

Invitation to meeting on Friday morning about the Container Ontology and its Server

One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me

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Invitation to meeting on Friday morning about the Container Ontology and its Server

One more try at setting up a Container Ontology workshop-let at HARMONY this week: Please contact me

4/25/22

S James Parsons Jr, Jake Beal2

4/21/22

Hi, James: PROV-O is a way of describing how things were created from other things. For example, we

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Hi, James: PROV-O is a way of describing how things were created from other things. For example, we

4/21/22

4/20/22

Bioprotocols as HARMONY 2022

Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the

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Bioprotocols as HARMONY 2022

Dear Colleagues, The Bioprotocols working group is planning two breakout sessions (zoom link) at the

4/20/22

4/7/22

Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY

Please contact me directly or respond on the list if you are interested in a session working with the

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Solicitation of interest: Container Ontology Hackathon at COMBINE HARMONY

Please contact me directly or respond on the list if you are interested in a session working with the

4/7/22

Jake Beal, … jeremy...@metamerlabs.io9

3/28/22

COMBINE registration open

As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping

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COMBINE registration open

As of now, I don't know. I unfortunately missed his container ontology meet. I can try to ping

3/28/22

3/15/22

Today's Status Meeting Canceled

Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away

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Today's Status Meeting Canceled

Hi Everyone, Our normally scheduled status meeting today will be canceled. Several of us are away

3/15/22

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