New Graph classes in core

[Thomas Ed. Bigot]

Hi everyone,

These last month, I’ve been designing new Graph classes for Bio++. I’ve merged them in master yesterday.

I’ve written a documentation page on the wiki. It’s incomplete for now, but should bring the main ideas of these Graphs:
http://biopp.univ-montp2.fr/wiki/index.php/Graphs

I’ve also written phylogeny objects PhyloNode and PhyloEdge which, associated to a AssociationTreeGraphObserver, could be a future replacement for bpp::Tree implementation. This work should be merged into newlik branch very soon.

I’m anticipating your comments! :-)

Thomas

[Thomas Ed. Bigot]

I’ve just commited 8ed633b in core/master making tree management fully functional (but it must remain bugs and some features to implement ! ;-) ).

Very close to commit PhyloTree and its friends into phyl/newlik.