Hi BioPAX-ers and Paxtools users,
If you have already downloaded "fat" paxtools-4.3.1*.jar before today from biopax.org/downloads/paxtools/
please download the updated jars now or a.s.a.p.
(I repackaged to fix the parser error that was simply due to auto-inclusion of old jaxb/stax implementation libs into those jars.)
If you re-build the jars from sources at tag v4.3.1 though, and run the console app or use that as library in your project, you'll get
the "...BioPaxIOException: Unexpected element at start: 6" error again; so don't - use the jars from the biopax downloads
or build from the latest sources 5.0.0-SNAPSHOT, which do not have the issue).
If you do not use the "fat" jars neither as console app nor library, i.e., if you only use some of Paxtools modules
(e.g., sbgn-converter, psimi-converter, paxtools-jene-io) in your java project as dependencies, then consider
explicitly excluding the following from that dependencies (in a maven pom.xml):
<!-- if it's the paxtools-jena-io then also - -->
On Monday, September 28, 2015 at 10:06:00 AM UTC-4, Igo R wrote:
Fixes bugs ...