BioPAX Level 3 Support?

[Oliver Ruebenacker]

Hello, All,

Which tools or data providers are currently supporting Level 3, or
are planning to do so in the near future? Thanks!

Take care
Oliver`

--
Oliver Ruebenacker, Computational Cell Biologist
Systems Biology Linker at Virtual Cell (http://vcell.org/sybil)
Turning Knowledge Data into Models
Center for Cell Analysis and Modeling
http://www.oliver.curiousworld.org

[D'Eustachio, Peter]

Reactome (data provider) supports level 3 already.

Hello, All,

Take care
Oliver`

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[ashok reddy Dinasarapu]

SGMP (data provider) supports level3.
http://www.signaling-gateway.org/molecule/

Ashok Reddy Dinasarapu, Brian Saunders, Iley Ozerlat, Kenan Azam and Shankar Subramaniam (2011). Signaling Gateway Molecule Pages - a data model perspective. Bioinformatics (Accepted).

[Nicolas Le Novère]

Hello,

BioModels Database exports the models in BioPAX3 (the relevant parts)

On 30/03/11 16:13, Oliver Ruebenacker wrote:
> Hello, All,
>
> Which tools or data providers are currently supporting Level 3, or
> are planning to do so in the near future? Thanks!
>
> Take care
> Oliver`
>

--
Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC,
Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468,
Skype:n.lenovere, AIM:nlenovere, twitter:@lenovere
http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/

[Suzanne Paley]

BioCyc supports Level 3.

Suzanne

[Ozgun Babur]

Repository version of ChiBE supports level 3.

http://sourceforge.net/projects/chibe/

Also the next release will be supporting level 3.

[Irma Martinez]

Hello,

RegulonDB data supports level 3 already.

 Regards,
Irma Martínez-Flores

[Huaiyu Mi]

PANTHER pathway (http://www.pantherdb.org/pathway/pathwayList.jsp).

Huaiyu

[Alexander Pico]

WikiPathways does as well. See individual download options on each pathway
page. We will add it to our batch download soon.

http://wikipathways.org

- Alex

On 3/30/11 8:13 AM, "Oliver Ruebenacker" <cur...@gmail.com> wrote:

[Jyoti Sharma]

Hi Everyone,

NetPath (http://www.netpath.org/)  supports BioPAX level 3.

Thanks,

Jyoti Sharma