BioPAX Validator Release

Igor Rodchenkov

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Jan 27, 2013, 5:47:02 PM1/27/13

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The BioPAX Validator 3.0.0 Release.

This is a new, re-factored and polished version, with many bug fixes and improvements in the core validation framework (API, settings, validation profiles, e.g., "notstrict" (new feature)), validation rules, auto-fix and normalization logic (which now respect user model's xml:base or allows one set own, uses Identifiers.org, etc.), and new style auto-generated developer's documentation.

BioPAX public maven repository: http://biopax.sf.net/m2repo/releases

Auto-generated documentation: http://biopax.sourceforge.net/m2site/validator-3.0.0/ (find javadoc, source xref, licenses, dependencies, and other information there)

Executable JARs can be downloaded from http://sourceforge.net/projects/biopax/files/validator/.

PS: a paper about this will be published too.

Igor Rodchenkov

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May 21, 2013, 12:16:52 PM5/21/13

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The BioPAX Validator 3.0.1 Release.

Minor changes and polishing: updated built-in OBO files (controlled vocabularies); new command-line option "--output=" instead of the second, previously obligatory argument; added -Dbiopax.normalizer.uri.strategy=simple (vs. the md5hex approach); using the latest Paxtools (4.2.0); fixes related to 'chebi.obo' to 'chebi' namespace change in MIRIAM, etc.

Auto-generated documentation: http://www.biopax.org/m2site/validator-3.0.1/

Executable JARs can be downloaded from http://www.biopax.org/downloads/validator/

http://www.biopax.org/validator

Igor Rodchenkov

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Aug 1, 2013, 6:28:56 PM8/1/13

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The BioPAX Validator 3.0.2 Release.

Updated built-in OBO files and MIRIAM XML (Note: there're important changes, such as 'obo.mi' was changed to 'psimi' in URIs, etc.). Fixed HTML links to the issue tracker and generated documentation.