help with building the network
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deri...@hotmail.com
Oct 28, 2009, 5:53:54 PM10/28/09
to BioNetBuilder
Hi,
I have been trying to build a network from a list of nodes (~500). i
go through the steps without a problem but the network that is
generated has over 3000 nodes in it (even when i do not ask the
program to include nearest neighbour nodes!).
As a test i tried to make a network with only 6 input nodes. it still
made the same 3000 node network even from these 6 genes.
anyone have any ideas what i am doing wrong?
Dee
I have been trying to build a network from a list of nodes (~500). i
go through the steps without a problem but the network that is
generated has over 3000 nodes in it (even when i do not ask the
program to include nearest neighbour nodes!).
As a test i tried to make a network with only 6 input nodes. it still
made the same 3000 node network even from these 6 genes.
anyone have any ideas what i am doing wrong?
Dee
Jay Konieczka
Oct 28, 2009, 9:05:03 PM10/28/09
to bionet...@googlegroups.com
Hi Dee,
Can you send me the list so I can take a look?
Thanks,
Jay
--
Jay H. Konieczka
Postdoctoral Fellow
O'Shea Lab
Harvard University
Northwest Labs
52 Oxford Street, Room 440
Cambridge, MA 02138
Regev Lab
Broad Institute
7 Cambridge Center
NE30-6175U
Cambridge, MA 02142
ph: +1(617) 714-7862
fx: +1(617) 496-5425
============================
Dee
Oct 29, 2009, 2:34:39 PM10/29/09
to BioNetBuilder
Hi Jay,
I am not sure if i added to the thread correctly but here is the list
again:
RefSeq:NM_001001881
RefSeq:NM_001001932
RefSeq:NM_001002268
RefSeq:NM_001002927
RefSeq:NM_001003948
RefSeq:NM_025483
RefSeq:NM_001005508
RefSeq:NM_178902
RefSeq:NM_029334
RefSeq:NM_023118
RefSeq:NM_023118
RefSeq:NM_001012401
RefSeq:NM_001013028
RefSeq:NM_001013371
RefSeq:NM_001024135
RefSeq:NM_001024139
RefSeq:NM_001024205
RefSeq:NM_080788
RefSeq:NM_008745
RefSeq:NM_144859
RefSeq:NM_175686
RefSeq:NM_175686
RefSeq:NM_001025577
RefSeq:NM_009192
RefSeq:NM_009192
RefSeq:NM_001033350
RefSeq:NM_010161
RefSeq:NM_025815
RefSeq:NM_007392
RefSeq:NM_007399
RefSeq:NM_007400
RefSeq:NM_007409
RefSeq:NM_007420
RefSeq:NM_007429
RefSeq:NM_007472
RefSeq:NM_007487
RefSeq:NM_009742
RefSeq:NM_007542
RefSeq:NM_007542
RefSeq:NM_007555
RefSeq:NM_007555
RefSeq:NM_007555
RefSeq:NM_007560
RefSeq:NM_007572
RefSeq:NM_007574
RefSeq:NM_007606
RefSeq:NM_007606
RefSeq:NM_007643
RefSeq:NM_007643
RefSeq:NM_007644
RefSeq:NM_007649
RefSeq:NM_007727
RefSeq:NM_007729
RefSeq:NM_007737
RefSeq:NM_007740
RefSeq:NM_007742
RefSeq:NM_007743
RefSeq:NM_007743
RefSeq:NM_007746
RefSeq:NM_007779
RefSeq:NM_007779
RefSeq:NM_007780
RefSeq:NM_007807
RefSeq:NM_007825
RefSeq:NM_007825
RefSeq:NM_007833
RefSeq:NM_007913
RefSeq:NM_007977
RefSeq:NM_007993
RefSeq:NM_007995
RefSeq:NM_007998
RefSeq:NM_008013
RefSeq:NM_008090
RefSeq:NM_008093
RefSeq:NM_008115
RefSeq:NM_008137
RefSeq:NM_008137
RefSeq:NM_013532
RefSeq:NM_008152
RefSeq:NM_008216
RefSeq:NM_008245
RefSeq:NM_008275
RefSeq:NM_008278
RefSeq:NM_008304
RefSeq:NM_011940
RefSeq:NM_011940
RefSeq:NM_008332
RefSeq:NM_008360
RefSeq:NM_008404
RefSeq:NM_207682
RefSeq:NM_008481
RefSeq:NM_008509
RefSeq:NM_008524
RefSeq:NM_008607
RefSeq:NM_008625
RefSeq:NM_008682
RefSeq:NM_008687
RefSeq:NM_008744
RefSeq:NM_008760
RefSeq:NM_008760
RefSeq:NM_008770
RefSeq:NM_008855
RefSeq:NM_008879
RefSeq:NM_008891
RefSeq:NM_008905
RefSeq:NM_008957
RefSeq:NM_008974
RefSeq:NM_008977
RefSeq:NM_008987
RefSeq:NM_009061
RefSeq:NM_009099
RefSeq:NM_009152
RefSeq:NM_009154
RefSeq:NM_009155
RefSeq:NM_009282
RefSeq:NM_009367
RefSeq:NM_009368
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009416
RefSeq:NM_009416
RefSeq:NM_009416
RefSeq:NM_178794
RefSeq:NM_009472
RefSeq:NM_009472
RefSeq:NM_009524
RefSeq:NM_009538
RefSeq:NM_009608
RefSeq:NM_009610
RefSeq:NM_009640
RefSeq:NM_009663
RefSeq:NM_009696
RefSeq:NM_009777
RefSeq:NM_009777
RefSeq:NM_009777
RefSeq:NM_009779
RefSeq:NM_009779
RefSeq:NM_009779
RefSeq:NM_009788
RefSeq:NM_009848
RefSeq:NM_009853
RefSeq:NM_009888
RefSeq:NM_009888
RefSeq:NM_030601
RefSeq:NM_030601
RefSeq:NM_009912
RefSeq:NM_009922
RefSeq:NM_009930
RefSeq:NM_009930
RefSeq:NM_009933
RefSeq:NM_009939
RefSeq:NM_009982
RefSeq:NM_009982
RefSeq:NM_009982
RefSeq:NM_010016
RefSeq:NM_010096
RefSeq:NM_010097
RefSeq:NM_010103
RefSeq:NM_010130
RefSeq:NM_010140
RefSeq:NM_010160
RefSeq:NM_010164
RefSeq:NM_010186
RefSeq:NM_010187
RefSeq:NM_010188
RefSeq:NM_010200
RefSeq:NM_010234
RefSeq:NM_010258
RefSeq:NM_010260
RefSeq:NM_010260
RefSeq:NM_010276
RefSeq:NM_010380
RefSeq:NM_010407
RefSeq:NM_010488
RefSeq:NM_010500
RefSeq:NM_184052
RefSeq:NM_010570
RefSeq:NM_010576
RefSeq:NM_010595
RefSeq:NM_010607
RefSeq:NM_010633
RefSeq:NM_010636
RefSeq:NM_010637
RefSeq:NM_010657
RefSeq:NM_010686
RefSeq:NM_010698
RefSeq:NM_010698
RefSeq:NM_146146
RefSeq:NM_146146
RefSeq:NM_010705
RefSeq:NM_010728
RefSeq:NM_010745
RefSeq:NM_010789
RefSeq:NM_010838
RefSeq:NM_010864
RefSeq:NM_010870
RefSeq:NM_010905
RefSeq:NM_011058
RefSeq:NM_011087
RefSeq:NM_011212
RefSeq:NM_175023
RefSeq:NM_011273
RefSeq:NM_011360
RefSeq:NM_011361
RefSeq:NM_011374
RefSeq:NM_011446
RefSeq:NM_011461
RefSeq:NM_011484
RefSeq:NM_011526
RefSeq:NM_198052
RefSeq:NM_011576
RefSeq:NM_011580
RefSeq:NM_011580
RefSeq:NM_011581
RefSeq:NM_011581
RefSeq:NM_011581
RefSeq:NM_011595
RefSeq:NM_011619
RefSeq:NM_011619
RefSeq:NM_011627
RefSeq:NM_011662
RefSeq:NM_011673
RefSeq:NM_011699
RefSeq:NM_011756
RefSeq:NM_011763
RefSeq:NM_011812
RefSeq:NM_011815
RefSeq:NM_011816
RefSeq:NM_011849
RefSeq:NM_011851
RefSeq:NM_011903
RefSeq:NM_011905
RefSeq:NM_011968
RefSeq:NM_011999
RefSeq:NM_013454
RefSeq:NM_013464
RefSeq:NM_013489
RefSeq:NM_013511
RefSeq:NM_013531
RefSeq:NM_013590
RefSeq:NM_013590
RefSeq:NM_013607
RefSeq:NM_013612
RefSeq:NM_013669
RefSeq:NM_013671
RefSeq:NM_013690
RefSeq:NM_013723
RefSeq:NM_013862
RefSeq:NM_013881
RefSeq:NM_013881
RefSeq:NM_015753
RefSeq:NM_015776
RefSeq:NM_015784
RefSeq:NM_015814
RefSeq:NM_016762
RefSeq:NM_016798
RefSeq:NM_016854
RefSeq:NM_016869
RefSeq:NM_177270
RefSeq:NM_016917
RefSeq:NM_016963
RefSeq:NM_016963
RefSeq:NM_017372
RefSeq:NM_017383
RefSeq:NM_017469
RefSeq:NM_018734
RefSeq:NM_018747
RefSeq:NM_018797
RefSeq:NM_018865
RefSeq:NM_018867
RefSeq:NM_018867
RefSeq:NM_018886
RefSeq:NM_019521
RefSeq:NM_019549
RefSeq:NM_019564
RefSeq:NM_019564
RefSeq:NM_019631
RefSeq:NM_019663
RefSeq:NM_019697
RefSeq:NM_019708
RefSeq:NM_019724
RefSeq:NM_019786
RefSeq:NM_019790
RefSeq:NM_019814
RefSeq:NM_019814
RefSeq:NM_019931
RefSeq:NM_020001
RefSeq:NM_020001
RefSeq:NM_020008
RefSeq:NM_020026
RefSeq:NM_020043
RefSeq:NM_020043
RefSeq:NM_020252
RefSeq:NM_020259
RefSeq:NM_020259
RefSeq:NM_020259
RefSeq:NM_020283
RefSeq:NM_020296
RefSeq:NM_021281
RefSeq:NM_021297
RefSeq: XM_622956
RefSeq:NM_021372
RefSeq:NM_021422
RefSeq:NM_021451
RefSeq:NM_021459
RefSeq:NM_021475
RefSeq:NM_021532
RefSeq:NM_021792
RefSeq:NM_021792
RefSeq:NM_022315
RefSeq:NM_022319
RefSeq:NM_133723
RefSeq:NM_023122
RefSeq:NM_023328
RefSeq:NM_023543
RefSeq:NM_023737
RefSeq:NM_023814
RefSeq:NM_023814
RefSeq:NM_023844
RefSeq:NM_024244
RefSeq:NM_024244
RefSeq:NM_024254
RefSeq:NM_024495
RefSeq:NM_025278
RefSeq:NM_025292
RefSeq:NM_025478
RefSeq:NM_025613
RefSeq:NM_025809
RefSeq:NM_025809
RefSeq:NM_025901
RefSeq:NM_027287
RefSeq:NM_025961
RefSeq:NM_027379
RefSeq:NM_026252
RefSeq:NM_026252
RefSeq:NM_026346
RefSeq:NM_026405
RefSeq:NM_026418
RefSeq:NM_026424
RefSeq:NM_026604
RefSeq:NM_026623
RefSeq:NM_026667
RefSeq:NM_026911
RefSeq:NM_027052
RefSeq:NM_027135
RefSeq:NM_027209
RefSeq:NM_027226
RefSeq:NM_027391
RefSeq:NM_028450
RefSeq:NM_027863
RefSeq:NM_027924
RefSeq:NM_028279
RefSeq:NM_028351
RefSeq:NM_028538
RefSeq:NM_028732
RefSeq:NM_028756
RefSeq:NM_028757
RefSeq:NM_028784
RefSeq:NM_028793
RefSeq:NM_028804
RefSeq:NM_028836
RefSeq:NM_028874
RefSeq:NM_028903
RefSeq:NM_029000
RefSeq:NM_029277
RefSeq:NM_029499
RefSeq:NM_029568
RefSeq:NM_029600
RefSeq:NM_029810
RefSeq:NM_030682
RefSeq:NM_030691
RefSeq:NM_030699
RefSeq:NM_030750
RefSeq:NM_031198
RefSeq:NM_031256
RefSeq:NM_031376
RefSeq:NM_033602
RefSeq:NM_033605
RefSeq:NM_033605
RefSeq:NM_033623
RefSeq:NM_053128
RefSeq:NM_053134
RefSeq:NM_053145
RefSeq:NM_053147
RefSeq:NM_053214
RefSeq:NM_212435
RefSeq:NM_212435
RefSeq:NM_053247
RefSeq:NM_053271
RefSeq:NM_054052
RefSeq:NM_080575
RefSeq:NM_130456
RefSeq:NM_130878
RefSeq:NM_133193
RefSeq:NM_133195
RefSeq:NM_133222
RefSeq:NM_133733
RefSeq:NM_133740
RefSeq:NM_133775
RefSeq:NM_133810
RefSeq:NM_133810
RefSeq:NM_133857
RefSeq:NM_133905
RefSeq:NM_133969
RefSeq:NM_133977
RefSeq:NM_134042
RefSeq:NM_134099
RefSeq:NM_134130
RefSeq:NM_138741
RefSeq:NM_139138
RefSeq:NM_139147
RefSeq:NM_139200
RefSeq:NM_139200
RefSeq:NM_139300
RefSeq:NM_144513
RefSeq:NM_144513
RefSeq:NM_144513
RefSeq:NM_144535
RefSeq:NM_144538
RefSeq:NM_144799
RefSeq:NM_144800
RefSeq:NM_144847
RefSeq:NM_144882
RefSeq:NM_178164
RefSeq:NM_144945
RefSeq:NM_145133
RefSeq:NM_146386
RefSeq:NM_145158
RefSeq:NM_145545
RefSeq:NM_145616
RefSeq:NM_145741
RefSeq:NM_145890
RefSeq:NM_145937
RefSeq:NM_145959
RefSeq:NM_146008
RefSeq:NM_146015
RefSeq:NM_146120
RefSeq:NM_147219
RefSeq:NM_147220
RefSeq:NM_153058
RefSeq:NM_153138
RefSeq:NM_153155
RefSeq:NM_153177
RefSeq:NM_153197
RefSeq:NM_153402
RefSeq:NM_153409
RefSeq:NM_153421
RefSeq:NM_153501
RefSeq:NM_153505
RefSeq:NM_153578
RefSeq:NM_153795
RefSeq:NM_172051
RefSeq:NM_172289
RefSeq:NM_172298
RefSeq:NM_172445
RefSeq:NM_172463
RefSeq:NM_172485
RefSeq:NM_172508
RefSeq:NM_172523
RefSeq:NM_172544
RefSeq:NM_172553
RefSeq:NM_172605
RefSeq:NM_172627
RefSeq:NM_172631
RefSeq:NM_172637
RefSeq:NM_172665
RefSeq:NM_172782
RefSeq:NM_172827
RefSeq:NM_172893
RefSeq:NM_172907
RefSeq:NM_173004
RefSeq:NM_173432
RefSeq:NM_173446
RefSeq:NM_173451
RefSeq:NM_175013
RefSeq:NM_175225
RefSeq:NM_175245
RefSeq:NM_175254
RefSeq:NM_175316
RefSeq:NM_175318
RefSeq:NM_175449
RefSeq:NM_175469
RefSeq:NM_175498
RefSeq:NM_175501
RefSeq:NM_175514
RefSeq:NM_175535
RefSeq:NM_175642
RefSeq:NM_176959
RefSeq:NM_177033
RefSeq:NM_177092
RefSeq:NM_177274
RefSeq:NM_177328
RefSeq:NM_177343
RefSeq:NM_177352
RefSeq:NM_177368
RefSeq:NM_177586
RefSeq:NM_177715
RefSeq:NM_177741
RefSeq:NM_177834
RefSeq:NM_178045
RefSeq:NM_178110
RefSeq:NM_178114
RefSeq:NM_178212
RefSeq:NM_178608
RefSeq:NM_178615
RefSeq:NM_178629
RefSeq:NM_178665
RefSeq:NM_178711
RefSeq:NM_178737
RefSeq:NM_178759
RefSeq:NM_178773
RefSeq:NM_178879
RefSeq:NM_180600
RefSeq:NM_181277
RefSeq:NM_181277
RefSeq:NM_181392
RefSeq:NM_182840
RefSeq:NM_182994
RefSeq:NM_183219
RefSeq:NM_198702
RefSeq:NM_199473
RefSeq:NR_002322
RefSeq:XM_126933
RefSeq:XM_127381
RefSeq:XM_129028
RefSeq:XM_129176
RefSeq:XM_129694
RefSeq:XM_129913
RefSeq:XM_130163
RefSeq:XM_130253
RefSeq:XM_132758
RefSeq:XM_135029
RefSeq:XM_136212
RefSeq:XM_136911
RefSeq:XM_139187
RefSeq:XM_140309
RefSeq:XM_140742
RefSeq:XM_141626
RefSeq:XM_143175
RefSeq:XM_144905
RefSeq:XM_147036
RefSeq:XM_193558
RefSeq:XM_193941
RefSeq:XM_204283
RefSeq:XM_283372
RefSeq:XM_283438
RefSeq:XM_284198
RefSeq:XM_354675
RefSeq:XM_354975
RefSeq:XM_355059
RefSeq:XM_357332
RefSeq:XM_358472
RefSeq:XM_484423
RefSeq:XM_484897
RefSeq:XM_485010
RefSeq:XM_485171
RefSeq:XM_485457
RefSeq:XM_485560
RefSeq:XM_485619
RefSeq:XM_485667
RefSeq: XM_622636
RefSeq:XM_488951
RefSeq:XM_489268
RefSeq:XM_489366
RefSeq:XM_619356
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq: XM_619796
RefSeq:XM_619801
RefSeq:XM_619892
RefSeq:XM_619958
RefSeq:XM_620310
Any ideas?
Dee
On Oct 28, 6:05 pm, Jay Konieczka <JKoniec...@mcb.harvard.edu> wrote:
> Hi Dee,
>
> Can you send me the list so I can take a look?
>
> Thanks,
>
> Jay
>
> --
> Jay H. Konieczka
> Postdoctoral Fellow
>
> O'Shea Lab
> Harvard University
> Northwest Labs
> 52 Oxford Street, Room 440
> Cambridge, MA 02138
>
> Regev Lab
> Broad Institute
> 7 Cambridge Center
> NE30-6175U
> Cambridge, MA 02142
>
> ph: +1(617) 714-7862
> fx: +1(617) 496-5425
>
> JKoniec...@mcb.harvard.edu http://www.mcb.harvard.edu/o'shea/
> ============================
>
> - Show quoted text -
I am not sure if i added to the thread correctly but here is the list
again:
RefSeq:NM_001001881
RefSeq:NM_001001932
RefSeq:NM_001002268
RefSeq:NM_001002927
RefSeq:NM_001003948
RefSeq:NM_025483
RefSeq:NM_001005508
RefSeq:NM_178902
RefSeq:NM_029334
RefSeq:NM_023118
RefSeq:NM_023118
RefSeq:NM_001012401
RefSeq:NM_001013028
RefSeq:NM_001013371
RefSeq:NM_001024135
RefSeq:NM_001024139
RefSeq:NM_001024205
RefSeq:NM_080788
RefSeq:NM_008745
RefSeq:NM_144859
RefSeq:NM_175686
RefSeq:NM_175686
RefSeq:NM_001025577
RefSeq:NM_009192
RefSeq:NM_009192
RefSeq:NM_001033350
RefSeq:NM_010161
RefSeq:NM_025815
RefSeq:NM_007392
RefSeq:NM_007399
RefSeq:NM_007400
RefSeq:NM_007409
RefSeq:NM_007420
RefSeq:NM_007429
RefSeq:NM_007472
RefSeq:NM_007487
RefSeq:NM_009742
RefSeq:NM_007542
RefSeq:NM_007542
RefSeq:NM_007555
RefSeq:NM_007555
RefSeq:NM_007555
RefSeq:NM_007560
RefSeq:NM_007572
RefSeq:NM_007574
RefSeq:NM_007606
RefSeq:NM_007606
RefSeq:NM_007643
RefSeq:NM_007643
RefSeq:NM_007644
RefSeq:NM_007649
RefSeq:NM_007727
RefSeq:NM_007729
RefSeq:NM_007737
RefSeq:NM_007740
RefSeq:NM_007742
RefSeq:NM_007743
RefSeq:NM_007743
RefSeq:NM_007746
RefSeq:NM_007779
RefSeq:NM_007779
RefSeq:NM_007780
RefSeq:NM_007807
RefSeq:NM_007825
RefSeq:NM_007825
RefSeq:NM_007833
RefSeq:NM_007913
RefSeq:NM_007977
RefSeq:NM_007993
RefSeq:NM_007995
RefSeq:NM_007998
RefSeq:NM_008013
RefSeq:NM_008090
RefSeq:NM_008093
RefSeq:NM_008115
RefSeq:NM_008137
RefSeq:NM_008137
RefSeq:NM_013532
RefSeq:NM_008152
RefSeq:NM_008216
RefSeq:NM_008245
RefSeq:NM_008275
RefSeq:NM_008278
RefSeq:NM_008304
RefSeq:NM_011940
RefSeq:NM_011940
RefSeq:NM_008332
RefSeq:NM_008360
RefSeq:NM_008404
RefSeq:NM_207682
RefSeq:NM_008481
RefSeq:NM_008509
RefSeq:NM_008524
RefSeq:NM_008607
RefSeq:NM_008625
RefSeq:NM_008682
RefSeq:NM_008687
RefSeq:NM_008744
RefSeq:NM_008760
RefSeq:NM_008760
RefSeq:NM_008770
RefSeq:NM_008855
RefSeq:NM_008879
RefSeq:NM_008891
RefSeq:NM_008905
RefSeq:NM_008957
RefSeq:NM_008974
RefSeq:NM_008977
RefSeq:NM_008987
RefSeq:NM_009061
RefSeq:NM_009099
RefSeq:NM_009152
RefSeq:NM_009154
RefSeq:NM_009155
RefSeq:NM_009282
RefSeq:NM_009367
RefSeq:NM_009368
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009369
RefSeq:NM_009416
RefSeq:NM_009416
RefSeq:NM_009416
RefSeq:NM_178794
RefSeq:NM_009472
RefSeq:NM_009472
RefSeq:NM_009524
RefSeq:NM_009538
RefSeq:NM_009608
RefSeq:NM_009610
RefSeq:NM_009640
RefSeq:NM_009663
RefSeq:NM_009696
RefSeq:NM_009777
RefSeq:NM_009777
RefSeq:NM_009777
RefSeq:NM_009779
RefSeq:NM_009779
RefSeq:NM_009779
RefSeq:NM_009788
RefSeq:NM_009848
RefSeq:NM_009853
RefSeq:NM_009888
RefSeq:NM_009888
RefSeq:NM_030601
RefSeq:NM_030601
RefSeq:NM_009912
RefSeq:NM_009922
RefSeq:NM_009930
RefSeq:NM_009930
RefSeq:NM_009933
RefSeq:NM_009939
RefSeq:NM_009982
RefSeq:NM_009982
RefSeq:NM_009982
RefSeq:NM_010016
RefSeq:NM_010096
RefSeq:NM_010097
RefSeq:NM_010103
RefSeq:NM_010130
RefSeq:NM_010140
RefSeq:NM_010160
RefSeq:NM_010164
RefSeq:NM_010186
RefSeq:NM_010187
RefSeq:NM_010188
RefSeq:NM_010200
RefSeq:NM_010234
RefSeq:NM_010258
RefSeq:NM_010260
RefSeq:NM_010260
RefSeq:NM_010276
RefSeq:NM_010380
RefSeq:NM_010407
RefSeq:NM_010488
RefSeq:NM_010500
RefSeq:NM_184052
RefSeq:NM_010570
RefSeq:NM_010576
RefSeq:NM_010595
RefSeq:NM_010607
RefSeq:NM_010633
RefSeq:NM_010636
RefSeq:NM_010637
RefSeq:NM_010657
RefSeq:NM_010686
RefSeq:NM_010698
RefSeq:NM_010698
RefSeq:NM_146146
RefSeq:NM_146146
RefSeq:NM_010705
RefSeq:NM_010728
RefSeq:NM_010745
RefSeq:NM_010789
RefSeq:NM_010838
RefSeq:NM_010864
RefSeq:NM_010870
RefSeq:NM_010905
RefSeq:NM_011058
RefSeq:NM_011087
RefSeq:NM_011212
RefSeq:NM_175023
RefSeq:NM_011273
RefSeq:NM_011360
RefSeq:NM_011361
RefSeq:NM_011374
RefSeq:NM_011446
RefSeq:NM_011461
RefSeq:NM_011484
RefSeq:NM_011526
RefSeq:NM_198052
RefSeq:NM_011576
RefSeq:NM_011580
RefSeq:NM_011580
RefSeq:NM_011581
RefSeq:NM_011581
RefSeq:NM_011581
RefSeq:NM_011595
RefSeq:NM_011619
RefSeq:NM_011619
RefSeq:NM_011627
RefSeq:NM_011662
RefSeq:NM_011673
RefSeq:NM_011699
RefSeq:NM_011756
RefSeq:NM_011763
RefSeq:NM_011812
RefSeq:NM_011815
RefSeq:NM_011816
RefSeq:NM_011849
RefSeq:NM_011851
RefSeq:NM_011903
RefSeq:NM_011905
RefSeq:NM_011968
RefSeq:NM_011999
RefSeq:NM_013454
RefSeq:NM_013464
RefSeq:NM_013489
RefSeq:NM_013511
RefSeq:NM_013531
RefSeq:NM_013590
RefSeq:NM_013590
RefSeq:NM_013607
RefSeq:NM_013612
RefSeq:NM_013669
RefSeq:NM_013671
RefSeq:NM_013690
RefSeq:NM_013723
RefSeq:NM_013862
RefSeq:NM_013881
RefSeq:NM_013881
RefSeq:NM_015753
RefSeq:NM_015776
RefSeq:NM_015784
RefSeq:NM_015814
RefSeq:NM_016762
RefSeq:NM_016798
RefSeq:NM_016854
RefSeq:NM_016869
RefSeq:NM_177270
RefSeq:NM_016917
RefSeq:NM_016963
RefSeq:NM_016963
RefSeq:NM_017372
RefSeq:NM_017383
RefSeq:NM_017469
RefSeq:NM_018734
RefSeq:NM_018747
RefSeq:NM_018797
RefSeq:NM_018865
RefSeq:NM_018867
RefSeq:NM_018867
RefSeq:NM_018886
RefSeq:NM_019521
RefSeq:NM_019549
RefSeq:NM_019564
RefSeq:NM_019564
RefSeq:NM_019631
RefSeq:NM_019663
RefSeq:NM_019697
RefSeq:NM_019708
RefSeq:NM_019724
RefSeq:NM_019786
RefSeq:NM_019790
RefSeq:NM_019814
RefSeq:NM_019814
RefSeq:NM_019931
RefSeq:NM_020001
RefSeq:NM_020001
RefSeq:NM_020008
RefSeq:NM_020026
RefSeq:NM_020043
RefSeq:NM_020043
RefSeq:NM_020252
RefSeq:NM_020259
RefSeq:NM_020259
RefSeq:NM_020259
RefSeq:NM_020283
RefSeq:NM_020296
RefSeq:NM_021281
RefSeq:NM_021297
RefSeq: XM_622956
RefSeq:NM_021372
RefSeq:NM_021422
RefSeq:NM_021451
RefSeq:NM_021459
RefSeq:NM_021475
RefSeq:NM_021532
RefSeq:NM_021792
RefSeq:NM_021792
RefSeq:NM_022315
RefSeq:NM_022319
RefSeq:NM_133723
RefSeq:NM_023122
RefSeq:NM_023328
RefSeq:NM_023543
RefSeq:NM_023737
RefSeq:NM_023814
RefSeq:NM_023814
RefSeq:NM_023844
RefSeq:NM_024244
RefSeq:NM_024244
RefSeq:NM_024254
RefSeq:NM_024495
RefSeq:NM_025278
RefSeq:NM_025292
RefSeq:NM_025478
RefSeq:NM_025613
RefSeq:NM_025809
RefSeq:NM_025809
RefSeq:NM_025901
RefSeq:NM_027287
RefSeq:NM_025961
RefSeq:NM_027379
RefSeq:NM_026252
RefSeq:NM_026252
RefSeq:NM_026346
RefSeq:NM_026405
RefSeq:NM_026418
RefSeq:NM_026424
RefSeq:NM_026604
RefSeq:NM_026623
RefSeq:NM_026667
RefSeq:NM_026911
RefSeq:NM_027052
RefSeq:NM_027135
RefSeq:NM_027209
RefSeq:NM_027226
RefSeq:NM_027391
RefSeq:NM_028450
RefSeq:NM_027863
RefSeq:NM_027924
RefSeq:NM_028279
RefSeq:NM_028351
RefSeq:NM_028538
RefSeq:NM_028732
RefSeq:NM_028756
RefSeq:NM_028757
RefSeq:NM_028784
RefSeq:NM_028793
RefSeq:NM_028804
RefSeq:NM_028836
RefSeq:NM_028874
RefSeq:NM_028903
RefSeq:NM_029000
RefSeq:NM_029277
RefSeq:NM_029499
RefSeq:NM_029568
RefSeq:NM_029600
RefSeq:NM_029810
RefSeq:NM_030682
RefSeq:NM_030691
RefSeq:NM_030699
RefSeq:NM_030750
RefSeq:NM_031198
RefSeq:NM_031256
RefSeq:NM_031376
RefSeq:NM_033602
RefSeq:NM_033605
RefSeq:NM_033605
RefSeq:NM_033623
RefSeq:NM_053128
RefSeq:NM_053134
RefSeq:NM_053145
RefSeq:NM_053147
RefSeq:NM_053214
RefSeq:NM_212435
RefSeq:NM_212435
RefSeq:NM_053247
RefSeq:NM_053271
RefSeq:NM_054052
RefSeq:NM_080575
RefSeq:NM_130456
RefSeq:NM_130878
RefSeq:NM_133193
RefSeq:NM_133195
RefSeq:NM_133222
RefSeq:NM_133733
RefSeq:NM_133740
RefSeq:NM_133775
RefSeq:NM_133810
RefSeq:NM_133810
RefSeq:NM_133857
RefSeq:NM_133905
RefSeq:NM_133969
RefSeq:NM_133977
RefSeq:NM_134042
RefSeq:NM_134099
RefSeq:NM_134130
RefSeq:NM_138741
RefSeq:NM_139138
RefSeq:NM_139147
RefSeq:NM_139200
RefSeq:NM_139200
RefSeq:NM_139300
RefSeq:NM_144513
RefSeq:NM_144513
RefSeq:NM_144513
RefSeq:NM_144535
RefSeq:NM_144538
RefSeq:NM_144799
RefSeq:NM_144800
RefSeq:NM_144847
RefSeq:NM_144882
RefSeq:NM_178164
RefSeq:NM_144945
RefSeq:NM_145133
RefSeq:NM_146386
RefSeq:NM_145158
RefSeq:NM_145545
RefSeq:NM_145616
RefSeq:NM_145741
RefSeq:NM_145890
RefSeq:NM_145937
RefSeq:NM_145959
RefSeq:NM_146008
RefSeq:NM_146015
RefSeq:NM_146120
RefSeq:NM_147219
RefSeq:NM_147220
RefSeq:NM_153058
RefSeq:NM_153138
RefSeq:NM_153155
RefSeq:NM_153177
RefSeq:NM_153197
RefSeq:NM_153402
RefSeq:NM_153409
RefSeq:NM_153421
RefSeq:NM_153501
RefSeq:NM_153505
RefSeq:NM_153578
RefSeq:NM_153795
RefSeq:NM_172051
RefSeq:NM_172289
RefSeq:NM_172298
RefSeq:NM_172445
RefSeq:NM_172463
RefSeq:NM_172485
RefSeq:NM_172508
RefSeq:NM_172523
RefSeq:NM_172544
RefSeq:NM_172553
RefSeq:NM_172605
RefSeq:NM_172627
RefSeq:NM_172631
RefSeq:NM_172637
RefSeq:NM_172665
RefSeq:NM_172782
RefSeq:NM_172827
RefSeq:NM_172893
RefSeq:NM_172907
RefSeq:NM_173004
RefSeq:NM_173432
RefSeq:NM_173446
RefSeq:NM_173451
RefSeq:NM_175013
RefSeq:NM_175225
RefSeq:NM_175245
RefSeq:NM_175254
RefSeq:NM_175316
RefSeq:NM_175318
RefSeq:NM_175449
RefSeq:NM_175469
RefSeq:NM_175498
RefSeq:NM_175501
RefSeq:NM_175514
RefSeq:NM_175535
RefSeq:NM_175642
RefSeq:NM_176959
RefSeq:NM_177033
RefSeq:NM_177092
RefSeq:NM_177274
RefSeq:NM_177328
RefSeq:NM_177343
RefSeq:NM_177352
RefSeq:NM_177368
RefSeq:NM_177586
RefSeq:NM_177715
RefSeq:NM_177741
RefSeq:NM_177834
RefSeq:NM_178045
RefSeq:NM_178110
RefSeq:NM_178114
RefSeq:NM_178212
RefSeq:NM_178608
RefSeq:NM_178615
RefSeq:NM_178629
RefSeq:NM_178665
RefSeq:NM_178711
RefSeq:NM_178737
RefSeq:NM_178759
RefSeq:NM_178773
RefSeq:NM_178879
RefSeq:NM_180600
RefSeq:NM_181277
RefSeq:NM_181277
RefSeq:NM_181392
RefSeq:NM_182840
RefSeq:NM_182994
RefSeq:NM_183219
RefSeq:NM_198702
RefSeq:NM_199473
RefSeq:NR_002322
RefSeq:XM_126933
RefSeq:XM_127381
RefSeq:XM_129028
RefSeq:XM_129176
RefSeq:XM_129694
RefSeq:XM_129913
RefSeq:XM_130163
RefSeq:XM_130253
RefSeq:XM_132758
RefSeq:XM_135029
RefSeq:XM_136212
RefSeq:XM_136911
RefSeq:XM_139187
RefSeq:XM_140309
RefSeq:XM_140742
RefSeq:XM_141626
RefSeq:XM_143175
RefSeq:XM_144905
RefSeq:XM_147036
RefSeq:XM_193558
RefSeq:XM_193941
RefSeq:XM_204283
RefSeq:XM_283372
RefSeq:XM_283438
RefSeq:XM_284198
RefSeq:XM_354675
RefSeq:XM_354975
RefSeq:XM_355059
RefSeq:XM_357332
RefSeq:XM_358472
RefSeq:XM_484423
RefSeq:XM_484897
RefSeq:XM_485010
RefSeq:XM_485171
RefSeq:XM_485457
RefSeq:XM_485560
RefSeq:XM_485619
RefSeq:XM_485667
RefSeq: XM_622636
RefSeq:XM_488951
RefSeq:XM_489268
RefSeq:XM_489366
RefSeq:XM_619356
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq:XM_619546
RefSeq: XM_619796
RefSeq:XM_619801
RefSeq:XM_619892
RefSeq:XM_619958
RefSeq:XM_620310
Any ideas?
Dee
On Oct 28, 6:05 pm, Jay Konieczka <JKoniec...@mcb.harvard.edu> wrote:
> Hi Dee,
>
> Can you send me the list so I can take a look?
>
> Thanks,
>
> Jay
>
> --
> Jay H. Konieczka
> Postdoctoral Fellow
>
> O'Shea Lab
> Harvard University
> Northwest Labs
> 52 Oxford Street, Room 440
> Cambridge, MA 02138
>
> Regev Lab
> Broad Institute
> 7 Cambridge Center
> NE30-6175U
> Cambridge, MA 02142
>
> ph: +1(617) 714-7862
> fx: +1(617) 496-5425
>
> ============================
>
> On Oct 28, 2009, at 5:53 PM, derin...@hotmail.com wrote:
>
>
>
>
>
> > Hi,
>
> > I have been trying to build a network from a list of nodes (~500). i
> > go through the steps without a problem but the network that is
> > generated has over 3000 nodes in it (even when i do not ask the
> > program to include nearest neighbour nodes!).
> > As a test i tried to make a network with only 6 input nodes. it still
> > made the same 3000 node network even from these 6 genes.
>
> > anyone have any ideas what i am doing wrong?
>
> > Dee- Hide quoted text -
> On Oct 28, 2009, at 5:53 PM, derin...@hotmail.com wrote:
>
>
>
>
>
> > Hi,
>
> > I have been trying to build a network from a list of nodes (~500). i
> > go through the steps without a problem but the network that is
> > generated has over 3000 nodes in it (even when i do not ask the
> > program to include nearest neighbour nodes!).
> > As a test i tried to make a network with only 6 input nodes. it still
> > made the same 3000 node network even from these 6 genes.
>
> > anyone have any ideas what i am doing wrong?
>
>
> - Show quoted text -
Dee
Oct 29, 2009, 2:31:57 PM10/29/09
to BioNetBuilder
Hi Jay,
Here is the list.
any ideas?
> ============================
Here is the list.
> Hi Dee,
>
> Can you send me the list so I can take a look?
>
> Thanks,
>
> Jay
>
> --
> Jay H. Konieczka
> Postdoctoral Fellow
>
> O'Shea Lab
> Harvard University
> Northwest Labs
> 52 Oxford Street, Room 440
> Cambridge, MA 02138
>
> Regev Lab
> Broad Institute
> 7 Cambridge Center
> NE30-6175U
> Cambridge, MA 02142
>
> ph: +1(617) 714-7862
> fx: +1(617) 496-5425
>
> JKoniec...@mcb.harvard.edu http://www.mcb.harvard.edu/o'shea/
>
> Can you send me the list so I can take a look?
>
> Thanks,
>
> Jay
>
> --
> Jay H. Konieczka
> Postdoctoral Fellow
>
> O'Shea Lab
> Harvard University
> Northwest Labs
> 52 Oxford Street, Room 440
> Cambridge, MA 02138
>
> Regev Lab
> Broad Institute
> 7 Cambridge Center
> NE30-6175U
> Cambridge, MA 02142
>
> ph: +1(617) 714-7862
> fx: +1(617) 496-5425
>
> ============================
>
> On Oct 28, 2009, at 5:53 PM, derin...@hotmail.com wrote:
>
>
>
>
>
> > Hi,
>
> > I have been trying to build a network from a list of nodes (~500). i
> > go through the steps without a problem but the network that is
> > generated has over 3000 nodes in it (even when i do not ask the
> > program to include nearest neighbour nodes!).
> > As a test i tried to make a network with only 6 input nodes. it still
> > made the same 3000 node network even from these 6 genes.
>
> > anyone have any ideas what i am doing wrong?
>
> On Oct 28, 2009, at 5:53 PM, derin...@hotmail.com wrote:
>
>
>
>
>
> > Hi,
>
> > I have been trying to build a network from a list of nodes (~500). i
> > go through the steps without a problem but the network that is
> > generated has over 3000 nodes in it (even when i do not ask the
> > program to include nearest neighbour nodes!).
> > As a test i tried to make a network with only 6 input nodes. it still
> > made the same 3000 node network even from these 6 genes.
>
> > anyone have any ideas what i am doing wrong?
>
Jay Konieczka
Nov 6, 2009, 10:57:36 AM11/6/09
to bionet...@googlegroups.com
Hi Dee,
I'm confused. Is this a new list and a new problem? What would you
like me to do?
Jay
I'm confused. Is this a new list and a new problem? What would you
like me to do?
Jay
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