Problem in retriving interactions from HPRD

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Guido Leoni

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Jul 12, 2011, 6:23:20 AM7/12/11
to BioNetBuilder
Dear Group
I'm trying to retrieve some interactions from HPRD with bionet. Even
if the interactions that i'm looking for are present in HPRDdatabase
they are not found by bionet.
Here is one example of 2 nodes for which bionet fails to retrieve
interactions:(LAMB1 NID1)

In order to retrieve the interactions I apply the following steps:

Select node in cytoscape
organism Homo sapiens
nodes from loaded network (use selected nodes in network)
select id types (gene name)

Please could someone give to me any suggestions about my error?
thank you very much
Guido

Kevin Drew

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Jul 12, 2011, 11:09:35 AM7/12/11
to bionet...@googlegroups.com, Guido Leoni
Hi,

I just sent you a username and password needed to access HPRD. Let me
know if you have trouble with it.

But you may see missing interactions in the networks built by
BioNetBuilder that are on the HPRD website because we are not at the
latest version of HPRD.

Thanks,

Kevin Drew
Bonneau Lab

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