Fwd: R: problem with bionetbuilder

[Richard Bonneau]

Begin forwarded message:

From: Dario Di Silvestre <dario.di...@itb.cnr.it>

Date: July 30, 2010 10:09:33 AM EDT

To: 'Richard Bonneau' <bon...@nyu.edu>

Subject: R: problem with bionetbuilder

Dear Richard,

if I try to start Bionetbuilder from my local version of Cytoscape or by your website http://err.bio.nyu.edu/cytoscape/bionetbuilder/ cytoscape error message is the following (the same problem is with the Cytoscape version 2.6.0, 2.6.3 and 2.7.0):

 

 

 

The second thing is that if among the plugins there is Bionetbuilder.jar file the Cytoscape start is very very slow. On the contrary iit star normally  when among the plugins I delete the Bionetbuilder.jar file.

 

Of course in any of this conditions then that Cytoscape is started the bionetbuilder give the message that I pasted previously.

 

 

 

 

 Thanks

dario

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Da: Richard Bonneau [mailto:bon...@nyu.edu]
Inviato: venerdì 30 luglio 2010 15.20
A: Dario Di Silvestre
Cc: Kevin Drew
Oggetto: Re: problem with bionetbuilder

 

Kevin,

 

   I saw that you restarted the server recently, will this fix Dario's problem?

 

Dario,

   Which version of cytoscape and can you show us a log of the failure, or give us a bit more info?

 

,

Rich

 

On Jul 30, 2010, at 3:50 AM, Dario Di Silvestre wrote:

Dear Richard,

my name is Dario Di Silvestre and I work for the ITB-CNR of SEGRATE (Milan-Italy)

I am writing you because I am a user of bionetbuilder server, very useful for our purpose. Our lab perform high-throughput proteomic analysis.

In the last few days when I try to launch cytoscape it is not able to run and it is blocked when it try to charge the bionetbuilder plugin.

Thanks

Dario