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prefinish for automated primer suggestion

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deKesi

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Sep 28, 2006, 4:20:43 PM9/28/06
to bionet-soft...@moderators.isc.org
Hello,

I would like to use prefinish in an automated way to suggest primers for
assembly finishing.
Due to a lack of documentation I'm not sure if this is possible at all.
Can I use prefinish from the console to suggest primers for an gap4 -
assembly?
Where can I find a more detailed documentation about this tool and his
features?
If prefinish isen't able to perform these task I would consider to use
autofinish. But I'm not sure how to convert the gap4 database into .ace
format for use by autofinish. Any hints on these?

With kind regards,

deKesi

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