Genes_in_Pictures (Human/Drosophila)

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Victor Solovyev

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Jul 16, 1999, 3:00:00 AM7/16/99
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Genes_in_Pictures (Human/Drosophila)
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Part of Infogen database - Known genes of Human and Drosophila
and Visualization of their functional signals is available at

http://genomic.sanger.ac.uk/

These Infogene files and Java Viewer of Gene structures is design by
Igor Seledtsov and Victor Solovyev for

Infogen is designed as a resource of information about genes
and their components

Java Viewer will be used for

a) Visually inspection of gene structure in Infogene entries
of known or predicted genes

b) In interactive Gene prediction in annotation genomic sequences
from genome sequencing Projects


HOW TO WORK WITH Genes_in_Pictures: see Help menu in Java Viewer: About
Infogene format see Help menu in Java Viewer: Infogen
Clicking by mouse you can see Infogen gene description
(see Help: About)
General Picture of GENBANK/INFOGENE content:

HUMAN GENES IN GENBANK/INFOGENE:

CDS total 34448
Partial CDS 20585
RNA CDS Total 24306
Partial RNA CDS 13329
DNA CDS Total 10142
Partial DNA CDS 7256
Exons Total 36674
Partial Exons 10985
Exons Total 36674
Genes Total 10142
Partial Genes 8226
Acceptor Site Total 26507
Acceptor Site standart 25902 ( 97.72%)
Acceptor Site putative 3024
Acceptor Site putative standart 2949 ( 97.52%)
Acceptor Site nonputative 23483
Acceptor Site nonputative standart 22953 ( 97.74%)
Donor Site Total 22341
Donor Site standart 21916 ( 98.10%)
Donor Site putative 2662
Donor Site putative standart 2596 ( 97.52%)
Donor Site nonputative 19679
Donor Site nonputative standart 19320 ( 98.18%)
Start codons 13854
Standart Start codons 13694 ( 98.85%)
Stop codons 13810
Standart Stop codons 13810 (100.00%)
CAAT-boxes /Total/Putative/Experimental 405 51 2
TATA-boxes /Total/Putative/Experimental 802 119 14
TSP (Cap sites) /Total/Putative/Experimental 2554 128 118
PolyA signals /Total/Putative/Experimental 3548 444 85
PolyA sites /Total/Putative/Experimental 2066 77 81

DROSOPHILA MELANOGASTER GENES IN GENBANK/INFOGENE:

CDS total 3521
Partial CDS 1025
RNA CDS Total 1865
Partial RNA CDS 316
DNA CDS Total 1656
Partial DNA CDS 709
Exons Total 4648
Partial Exons 1840
Exons Total 4648
Genes Total 1656
Partial Genes 753
Acceptor Site Total 3043
Acceptor Site standart 2870 ( 94.31%)
Acceptor Site putative 135
Acceptor Site putative standart 133 ( 98.52%)
Acceptor Site nonputative 2908
Acceptor Site nonputative standart 2737 ( 94.12%)
Donor Site Total 2014
Donor Site standart 1873 ( 93.00%)
Donor Site putative 70
Donor Site putative standart 69 ( 98.57%)
Donor Site nonputative 1944
Donor Site nonputative standart 1804 ( 92.80%)
Start codons 2496
Standart Start codons 2475 ( 99.16%)
Stop codons 2476
Standart Stop codons 2476 (100.00)
CAAT-boxes /Total/Putative/Experimental 39 4 0
TATA-boxes /Total/Putative/Experimental 217 24 3
TSP (Cap sites) /Total/Putative/Experimental 539 10 35
PolyA signals /Total/Putative/Experimental 773 104 20
PolyA sites /Total/Putative/Experimental 420 7 19

--
Victor Solovyev
The Sanger Centre, Hinxton, Cambridge CB10 1SA, UK
Email: solo...@sanger.ac.uk http://genomic.sanger.ac.uk
Phone: 44-1223-494799 FAX: 44-1223-494919


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