Perl script in miRanda microRNA data output

[kennerqq]

Hi all,

I used miRanda software to predict the microRNA target from 3'UTR. It come
up with a large file which includes those "hits" and "no hits" lines. Since
it is too big to handle, i want to remove the "no hits" lines. I heard that
using a simple Perl Script can easily get rid of "no hits" lines in the
document. Unfortunately, I do not know how to use it. Does anybody have a
clue?

Thanks a lot,

Ken

[Morris, Chris (STFC,DL,CSE)]

You don't even need per perl. Just do:
grep -v 'no hits' output.txt

____________________________________________
Chris Morris
chris....@stfc.ac.uk
Tel: +44 1925 603689 Fax: +44 1925 603825
Mobile: 07921-717915
http://pims.instruct-fp7.eu/
STFC, Daresbury Lab, Daresbury, Warrington, UK, WA4 4AD

> _______________________________________________
> Comp-bio mailing list
> Comp...@net.bio.net
> http://www.bio.net/biomail/listinfo/comp-bio
--
Scanned by iCritical.

[Lyle Wiedeman]

It's also easy and sometimes faster to do with sed:

sed -e '/no hits/d' output.txt

Lyle Wiedeman
UC Irvine