Problem of merging map and qtr files after loading

[Hao-Xun Chang]

Hello Dr. Yannick De Oliveira,

    I am a new user of BioMercatorV4.2, and I encountered some issue after loading data. 

    

    When I loaded two files from a friend, who successfully analyzed his data using BioMercator, the map and qtr files merged into one. 

    However, when I loaded my files, they appeared separated in the Java GUI (MacOS). 

    I can visualize each chromosome and markers from the separated map file, but chromosomes in the qtr file appeared compressed and weird.

    

    Anyway, I believe these two files should be merged, but I am not sure what is going wrong. 

    I have my test files attached (tab delimited txt), and would you please provide me some thoughts? Thank you very much.

Hao

[Pietro]

Dear Hao,

I found some formatting errors in your file, for example there were some tabs after "chr=" and "lg=" lines and after "mapName=" line.

To my experience there should not be extra spaces and tabs.

Moreover I found "chr=5" and "lg=6" in the map file.

I corrected those problems and I could load the files correctly.

You can find them attached, they should be fine.

Best

Pietro

[Yannick De-Oliveira]

Thank you for this answer Pietro,

 

Cheers

Yannick

 

Yannick DE OLIVEIRA

IE Bioinformatique - INRA

Génétique Quantitative et Évolution – Le Moulon

INRA – Université Paris-Sud – CNRS – AgroParisTech

Ferme du Moulon

91190 Gif-sur-Yvette

France

+331.69.33.23.76

 

De : biome...@googlegroups.com [mailto:biome...@googlegroups.com] De la part de Pietro
Envoyé : lundi 17 avril 2017 20:37
À : biomercator <biome...@googlegroups.com>
Objet : [biomercator] Re: Problem of merging map and qtr files after loading

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