Project QTL on physical map without functionnal annotation

[Stellita WithNoName]

Hi!

I just whant to know if it's posible to project QTL on physical map without really fill the column for annotation sequence? 

If it's possible, how my file should look? do I neek to put NA or other argument? 

Thanks for the reply

[mukesh choudhary]

Dear Stella
Can you just provide me the latest GFF and XRef file for use as structural and functional annotation files for maize? I need to learn the process of preparing anchor files. Please provide key steps and links that can help in making anchor file.

[Yannick De-Oliveira]

Dear Stella,

 

By ‘annotation’ do you mean functionnal annotation ? if it is the case I guess you can just use structural annotation to project your QTLs on a physical map, you will probably need to provide an empty functional annotation file

 

Best,

Yannick

 

PS : please do not hesitate to use the new forum for BioMercator :

https://sourcesup.renater.fr/forum/?group_id=2301

 

--

Yannick DE OLIVEIRA

IE Bioinformatique - INRA

Génétique Quantitative et Évolution – Le Moulon

INRA – Université Paris-Sud – CNRS – AgroParisTech

Ferme du Moulon

91190 Gif-sur-Yvette

France

+331.69.33.23.76

 

De : biome...@googlegroups.com [mailto:biome...@googlegroups.com] De la part de Stellita WithNoName
Envoyé : mercredi 12 juin 2019 11:06
À : biomercator <biome...@googlegroups.com>
Objet : [biomercator] Project QTL on physical map without functionnal annotation

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