Re: some problem in Biomart, Thank you for help!

[Arek Kasprzyk]

Hi Xiaoming,

The best place to send such queries is biomar...@googlegroups.com (cc'ed).

Re: 'report'

Please start from the beginning by creating config from your new source. Once this is done your 'report' tab becomes enabled and you can create report by clicking 'add access point'.

Re: configuring with a different database host.

In order to see the  the option "Do you want to use the existing config?" your databases should comply with the mart format and have pre-existing mart configuration. You can try one of the databases from the public server at martdb.ensembl.org to see how it works.

hope this helps,

a

On 4 July 2013 12:35, z z <lamz1...@yahoo.com.cn> wrote:

Hi,Arek Kasprzyk.

I had used biomart and confronted some difficulties, I couldn't find solution in google, and had no idea which Users Mail List to send to, So I write this email.

First, I had delete report GUItab, and I want to make report now, how can I make report GUItab again? I had made a GUItab called reporte, but after selecting config, the following step "choose attribute" didn't show up. I find that the properties of new report GUItab is martform, while the raw GUItab is martreport, but I cann't modify the new properties to martreport.

Second, I had finished all the job in my own computer, and scp biomart.registry.file, biomart.registry.key.file to serverce. The biomart is deployed in http://www.ABC.org:9000 and my database is in http://www.ABC.org:3306. If I want to get all configured in xml without raw xml file, How should I do? I had follow part 5.4 of document, adding a new RDBMS Source, when I fill Host:www.ABC.org, Port:3306, Username and Password as my database, and select Relational mart, there would be some databases available in the left panel, not marts as document, so I cann't find "Do you want to use the existing config?" I had try to fill as Host:www.ABC.org, Port:9000, but it doesn't work, I think I shold use another Username and Password, but what it is? In a word, how can I get config that I had done?

Thank you for your help!

Best wishes!

                                                                                                                                                               &nb sp;                      Zhong Xiaoming