Fw: Using jSBGN for Biopax animation

[rez...@yahoo.com]

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From: rez...@yahoo.com <rez...@yahoo.com>;
To: Thomas...@googlemail.com <Thomas...@googlemail.com>;
Subject: Using jSBGN for Biopax animation
Sent: Sun, Jun 1, 2014 11:06:41 AM

Dear Thomas, I'm working for a Biopax project. The goal of the project is to animate a Biopax model: showing movements from one node to the other one. Nodes and edges are SBGN nodes and edges. - Does jSBGN suitable for this purpose? - Is it possible to associate events to jSBGN nodes? Thanks in advance, Reza Haydarlou VU university Amsterdam Sent from Yahoo Mail on Android

[Thomas Handorf]

Hi Reza,

I'm not 100% sure what kind of animation you mean. juSBGN/biographer does not support animation directly. If you want to move nodes this can only be done programmatically accessing the biographer UI library. The nodes shown a svg objects, and you may be able to animate them trough css, but the corresponding data element wouldn't be updated then. 

to move programatically you would need to do

graph.drawables()['nodeid'].position(x,y)

in biographer editor:

editor.graph.drawables()['nodeid'].position(x,y)

.position()

will get the current position

I hope i could help you a bit,

all the best,

Thomas

On Monday, June 2, 2014 10:07:04 PM UTC+2, rez...@yahoo.com wrote:

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