Searching BioGPS through R statistical software

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h.moo...@gmail.com

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Mar 6, 2017, 10:40:34 AM3/6/17
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Hi,

I am wondering if there is a package to perform a search on a list of probe IDs through R software, for example such as the Bioconductor BiomaRt?

thanks in advance.
Best,
Hossein

G Tsueng

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Mar 17, 2017, 4:44:04 PM3/17/17
to BioGPS, h.moo...@gmail.com
Hi Hossein,

We use MyGene.info services for ID conversion.  There is an R package available via Bioconductor called MyGene.R which pretty much allows you to do batch id conversion and annotation.  You can find out more about this package here: https://www.biostars.org/p/120691/

If you look at the 'Try live API' page from MyGene.info, you will see "204639_at" (an affymetrics probeset id) as a query example. 

best wishes,
ginger

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