RE:NCI60_cell_line

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Rajasekhar Moturi

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Aug 8, 2016, 10:29:40 AM8/8/16
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Hi

 

I have found one mistake in NCI60 cell line data in Biogps. Generally the default display in BioGPS expression viewer/activity chart is an average of the two cell lines. But NCI H226 was not taken average it has displayed two times.

 

Please correct me if I am wrong

 

Regards

Raja Moturi

 

 

From: Rajasekhar Moturi
Sent: Thursday, August 04, 2016 12:26 PM
To: 'bio...@googlegroups.com'
Subject: Re:NCI60

 

Hi Andrew

 

Greetings of the day!!!

 

I have a small query on NCI60 cell line expression with specific target gene. I downloaded the NCI60 data from your downloads option. I have found there is variation in expression of 1007_s_at (probe) from the file I have downloaded and results displayed online Biogps, not only this specific gene mentioned but all the probes there is a variation from the file downloaded and displayed online. It would be great if you can help on this

 

Thanks in advance

 

 

Regards

Raja moturi

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G Tsueng

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Aug 8, 2016, 11:38:51 AM8/8/16
to BioGPS, rajasekh...@gvkbio.com
Hi Raja,

Thanks for bringing this to our attention!  It may be the way the two samples were named that the program did not automatically average them when displaying it in the viewer.  I'll follow up with the devs to have it fixed.

best wishes,
ginger
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