Error running models with adjacent areas with disjunct distributions

[mpnogu...@gmail.com]

Hi there, everyone, hope you are well.

A colleague of mine is trying to run models in BioGeoBEARS that include the area adjacent matrix. However, whenever she tries to run the model, it gives the following error:

Error in tipranges_to_tip_condlikes_of_data_on_each_state(tipranges, phy, : 

STOP ERROR in tipranges_to_tip_condlikes_of_data_on_each_state(): 

Your geography file has a tip range which is not allowed in your specified state space (states_list). 

The tip is: Liolaemus_lentus 

The 0-based areas in the range is/are: '4_5_6' 

The letter codes in the range are: 'E_F_G 

Try editing either the geography file, the areas allowed or areas_adjacency matrices, or the states_list (non-stratified) / lists_of_states_lists_Obased (stratified).

The tip that it is referring has a disjunct disribution (and is the only specie that has it). The image bellow shows the distribution of the specie. Can a model with an adjacent areas' matrix run when there is a specie with this distribution? How can we fix this error?

Cheers.

Matheus Pontes Nogueira

[Nick Matzke]

Hi -- please see:

Manually modifying the list of states/ranges — A BETTER SOLUTION than the areas-adjacency matrix

http://phylo.wikidot.com/biogeobears#better_than_adjacency

Cheers!

Nick

--
You received this message because you are subscribed to the Google Groups "BioGeoBEARS" group.
To unsubscribe from this group and stop receiving emails from it, send an email to biogeobears...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/biogeobears/7cba2b3a-6cf9-4221-a58b-9f1b47ab0af1n%40googlegroups.com.

[Matheus Pontes Nogueira]

Hi Nick, thanks for the response!

I will send this link to her. Thanks once again for your help!

Cheers.

Matheus.

To view this discussion on the web visit https://groups.google.com/d/msgid/biogeobears/CAJdu7BA9rhW24EQp1mZxSkR7%3DrDcBRrh5gi_7p0fQhym-wuMnA%40mail.gmail.com.

--

Matheus Pontes Nogueira

Bacharel em Ciências Biológicas - Universidade Federal de São Paulo.

Mestre em Evolução e Diversidade - Universidade Federal do ABC

Doutorando em Evolução e Diversidade - Universidade Federal do ABC

Currículo Lattes

mpnogu...@gmail.com

Celular: +55 (11) 95822-4229

Laboratório de Evolução e Diversidade I (LED I) - UFABC

campus São Bernardo do Campo - Bloco Delta

Rua Arcturus, 3. Jardim Antares.

09606-070, São Bernardo do Campo - SP

www.ufabc.edu.br