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Nick Matzke
, …
Ivan Magalhães
4
Jun 23
y,s,v, and j: per-event weights of cladogenetic range inheritance events in BioGeoBEARS
Hi Nick, Many thanks for this very detailed explanation. I am trying to understand better how the y,
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y,s,v, and j: per-event weights of cladogenetic range inheritance events in BioGeoBEARS
Hi Nick, Many thanks for this very detailed explanation. I am trying to understand better how the y,
Jun 23
Ziv Lieberman
,
Nick Matzke
5
Jun 20
Stop Error in stratified areas-adjacency analyses
Ah-ha! That would do it ;) Thank you for the very careful check of the inputs and for the explanation
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Stop Error in stratified areas-adjacency analyses
Ah-ha! That would do it ;) Thank you for the very careful check of the inputs and for the explanation
Jun 20
Ailton Matheus
,
Ivan Magalhães
2
May 30
Request for help!
Hi Ailton, this looks correct. AIC weights compare the relative fits of models and always sum up to 1
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Request for help!
Hi Ailton, this looks correct. AIC weights compare the relative fits of models and always sum up to 1
May 30
SK
,
Nick Matzke
2
May 28
Seeking Advice on using BioGeoBEARS with Incomplete Continental Data-reg.
Hi all, I am currently a postdoctoral in India, focussing on subterranean taxa called Bathynellacea,
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Seeking Advice on using BioGeoBEARS with Incomplete Continental Data-reg.
Hi all, I am currently a postdoctoral in India, focussing on subterranean taxa called Bathynellacea,
May 28
Peter Makovicky
,
Nick Matzke
4
May 6
cannot get graphic results to plot
Thanks! That's a very handy command. On Sunday, May 4, 2025 at 8:27:31 PM UTC-5 nickmat...@gmail.
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cannot get graphic results to plot
Thanks! That's a very handy command. On Sunday, May 4, 2025 at 8:27:31 PM UTC-5 nickmat...@gmail.
May 6
Sid S
,
Nick Matzke
3
May 3
How to show trees in increasing order ?
Hiya, If by "increasing order", you mean a ladderized tree, the method would be: 1.
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How to show trees in increasing order ?
Hiya, If by "increasing order", you mean a ladderized tree, the method would be: 1.
May 3
gtgus...@gmail.com
,
Nick Matzke
4
Apr 4
Stratified analysis error at Uppass
Nice! Yes, the analyses do appear to have run correctly. Good to know about the differences in the .
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Stratified analysis error at Uppass
Nice! Yes, the analyses do appear to have run correctly. Good to know about the differences in the .
Apr 4
cge...@gmail.com
,
Nick Matzke
3
Mar 27
section_the_tree in RASP
Thanks for the answer, Nick. I actually have fossils in the tree... almost every taxa... But now I
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section_the_tree in RASP
Thanks for the answer, Nick. I actually have fossils in the tree... almost every taxa... But now I
Mar 27
Ned Liu
,
Nick Matzke
3
Mar 17
Area allowed txt file format
Hi! areas_allowed is useful for very simple scenarios like islands disappearing back in time, but
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Area allowed txt file format
Hi! areas_allowed is useful for very simple scenarios like islands disappearing back in time, but
Mar 17
Dora Julieth Chávarro
,
Nick Matzke
3
Mar 5
time-stratification
Thank you so much! El mar, 4 mar 2025 a la(s) 5:58 pm, Nick Matzke (nickmat...@gmail.com)
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time-stratification
Thank you so much! El mar, 4 mar 2025 a la(s) 5:58 pm, Nick Matzke (nickmat...@gmail.com)
Mar 5
ALVARO QUESADA GARCIA
Feb 24
Multiple states tied
Hi Nick and everyone, I hope this email finds you well. I am a PhD student and I am not an expert
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Multiple states tied
Hi Nick and everyone, I hope this email finds you well. I am a PhD student and I am not an expert
Feb 24
Aniket Vaibhav Ranjangaonkar
,
Nick Matzke
7
Jan 23
Guidance on the "w" Parameter for Estimating Dispersal Multipliers
Dear Dr. Nick Matzke, Thank you for your detailed explanation. I appreciate your time and the clarity
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Guidance on the "w" Parameter for Estimating Dispersal Multipliers
Dear Dr. Nick Matzke, Thank you for your detailed explanation. I appreciate your time and the clarity
Jan 23
Felipe Pereira da Rocha
2
Jan 23
Starting an analysis
Hello everyone, Can anyone help me with this, please? On Thursday, 3 October 2024 at 19:54:15 UTC+8
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Starting an analysis
Hello everyone, Can anyone help me with this, please? On Thursday, 3 October 2024 at 19:54:15 UTC+8
Jan 23
Dora Julieth Chávarro
,
Nick Matzke
3
Jan 23
Number of areas
Thank you so much!!! El jueves, 23 de enero de 2025 a la(s) 6:32:01 pm UTC-5, nickmat...@gmail.com
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Number of areas
Thank you so much!!! El jueves, 23 de enero de 2025 a la(s) 6:32:01 pm UTC-5, nickmat...@gmail.com
Jan 23
Aniket Vaibhav Ranjangaonkar
,
Nick Matzke
4
8/30/24
Error in BioGeoBEARS Analysis
Dear Nick, Thank you very much for your support. I appreciate the insight regarding the Newick file
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Error in BioGeoBEARS Analysis
Dear Nick, Thank you very much for your support. I appreciate the insight regarding the Newick file
8/30/24
Sébastien Mirolo
, …
Viktor Baranov
5
8/13/24
max_range_size Fatal Error
Hi Nick and everyone! I am getting a similar error message, > check_BioGeoBEARS_run(
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max_range_size Fatal Error
Hi Nick and everyone! I am getting a similar error message, > check_BioGeoBEARS_run(
8/13/24
David Ortiz
, …
Julia Dupin
5
7/24/24
Genus-level biogeographic analyses and incomplete sampling
Hi Julia: Thanks a lot for your answer. Actually, there are a pretty limited number of biogeographic
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Genus-level biogeographic analyses and incomplete sampling
Hi Julia: Thanks a lot for your answer. Actually, there are a pretty limited number of biogeographic
7/24/24
Loriann Rubio
7/22/24
Super Spontan 2012 Full 46
Super Spontan merupakan rancangan televisyen realiti yang disiarkan di saluran Astro Warna yang
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Super Spontan 2012 Full 46
Super Spontan merupakan rancangan televisyen realiti yang disiarkan di saluran Astro Warna yang
7/22/24
Hannah H
,
Nick Matzke
6
7/16/24
BAYAREALIKE or BAYAREALIKE + J
Thank you for all your help! Much appreciated. Best, Hannah On Tuesday 16 July 2024 at 00:42:54 UTC+1
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BAYAREALIKE or BAYAREALIKE + J
Thank you for all your help! Much appreciated. Best, Hannah On Tuesday 16 July 2024 at 00:42:54 UTC+1
7/16/24
Dora Julieth Chávarro
,
Nick Matzke
2
7/14/24
Biogeographic map
Hi! The map is totally independent from BioGeoBEARS. You can do such maps in R, with packages like
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Biogeographic map
Hi! The map is totally independent from BioGeoBEARS. You can do such maps in R, with packages like
7/14/24
rper...@gmail.com
,
Nick Matzke
2
6/24/24
range switching event running DIVA-LIKE without the j parameter
Hi, Assuming no errors in terms of naming models or whatever, a DIVALIKE model without (or even with)
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range switching event running DIVA-LIKE without the j parameter
Hi, Assuming no errors in terms of naming models or whatever, a DIVALIKE model without (or even with)
6/24/24
Viktor Baranov
2
6/11/24
Erorr when loading timeperiods (?)
Resolved - unnoticed space in the adjacency and distances matrices. Apologies for bothering you! On
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Erorr when loading timeperiods (?)
Resolved - unnoticed space in the adjacency and distances matrices. Apologies for bothering you! On
6/11/24
Carme Blanco
,
Nick Matzke
2
5/29/24
Error_in_stochastic_simulation
Hi -- this error -- the real issue is at the bottom -- looks like one of the places where new R
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Error_in_stochastic_simulation
Hi -- this error -- the real issue is at the bottom -- looks like one of the places where new R
5/29/24
Nick Matzke
5/8/24
Fwd: [nmatzke/BioGeoBEARS] fix(optimx): Fix version checking for optimx (PR #14)
Hi all, Some intrepid users figured out a bug that was occurring. I was able to replicate it when I
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Fwd: [nmatzke/BioGeoBEARS] fix(optimx): Fix version checking for optimx (PR #14)
Hi all, Some intrepid users figured out a bug that was occurring. I was able to replicate it when I
5/8/24
Dora Julieth Chávarro
4/25/24
Trait-dependent dispersal
Hi everyone! I am working on a trait-dependent dispersal analysis with the description of Klaus and
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Trait-dependent dispersal
Hi everyone! I am working on a trait-dependent dispersal analysis with the description of Klaus and
4/25/24
Théo Driancourt
,
Nick Matzke
3
4/11/24
Statistical Comparisons and Adjacency
Apologies for missing these questions. Answers... On Friday, March 22, 2024 at 12:47:50 AM UTC+13
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Statistical Comparisons and Adjacency
Apologies for missing these questions. Answers... On Friday, March 22, 2024 at 12:47:50 AM UTC+13
4/11/24
Nick Matzke
4/11/24
manual states problem / solution
Hi, A user was getting this error when manually modifying the states list: http://phylo.wikidot.com/
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manual states problem / solution
Hi, A user was getting this error when manually modifying the states list: http://phylo.wikidot.com/
4/11/24
Justin Bernstein
,
Nick Matzke
3
3/26/24
BioGeoBEARS changing extant range
Hi -- you are almost certainly just missing some modification to the states_list somewhere. You
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BioGeoBEARS changing extant range
Hi -- you are almost certainly just missing some modification to the states_list somewhere. You
3/26/24
Valentina Todisco
,
Nick Matzke
4
3/26/24
Pie charts colours
On Wednesday, March 27, 2024 at 10:37:47 AM UTC+13 valentin...@gmail.com wrote: In particular it says
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Pie charts colours
On Wednesday, March 27, 2024 at 10:37:47 AM UTC+13 valentin...@gmail.com wrote: In particular it says
3/26/24
Valentina Todisco
, …
Gimo Daniel
7
3/11/24
Installation problem
Hi Gimo, It worked! Thank you so much. Best V Il giorno lun 11 mar 2024 alle ore 09:02 Gimo Daniel
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Installation problem
Hi Gimo, It worked! Thank you so much. Best V Il giorno lun 11 mar 2024 alle ore 09:02 Gimo Daniel
3/11/24