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Felipe Pereira da Rocha
Oct 3
Starting an analysis
Dear all, I appreciate any support and I am sorry for posting very basic questions in the group!
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Starting an analysis
Dear all, I appreciate any support and I am sorry for posting very basic questions in the group!
Oct 3
Sid S
Sep 17
How to show trees in increasing order ?
Hi all, Is it possible to show the BioGeoBEARS output in increasing order as attached in the figure
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How to show trees in increasing order ?
Hi all, Is it possible to show the BioGeoBEARS output in increasing order as attached in the figure
Sep 17
Aniket Vaibhav Ranjangaonkar
,
Nick Matzke
4
Aug 30
Error in BioGeoBEARS Analysis
Dear Nick, Thank you very much for your support. I appreciate the insight regarding the Newick file
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Error in BioGeoBEARS Analysis
Dear Nick, Thank you very much for your support. I appreciate the insight regarding the Newick file
Aug 30
Sébastien Mirolo
, …
Viktor Baranov
5
Aug 13
max_range_size Fatal Error
Hi Nick and everyone! I am getting a similar error message, > check_BioGeoBEARS_run(
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max_range_size Fatal Error
Hi Nick and everyone! I am getting a similar error message, > check_BioGeoBEARS_run(
Aug 13
David Ortiz
, …
Julia Dupin
5
Jul 24
Genus-level biogeographic analyses and incomplete sampling
Hi Julia: Thanks a lot for your answer. Actually, there are a pretty limited number of biogeographic
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Genus-level biogeographic analyses and incomplete sampling
Hi Julia: Thanks a lot for your answer. Actually, there are a pretty limited number of biogeographic
Jul 24
Loriann Rubio
Jul 22
Super Spontan 2012 Full 46
Super Spontan merupakan rancangan televisyen realiti yang disiarkan di saluran Astro Warna yang
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Super Spontan 2012 Full 46
Super Spontan merupakan rancangan televisyen realiti yang disiarkan di saluran Astro Warna yang
Jul 22
Hannah H
,
Nick Matzke
6
Jul 16
BAYAREALIKE or BAYAREALIKE + J
Thank you for all your help! Much appreciated. Best, Hannah On Tuesday 16 July 2024 at 00:42:54 UTC+1
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BAYAREALIKE or BAYAREALIKE + J
Thank you for all your help! Much appreciated. Best, Hannah On Tuesday 16 July 2024 at 00:42:54 UTC+1
Jul 16
Dora Julieth Chávarro
,
Nick Matzke
2
Jul 14
Biogeographic map
Hi! The map is totally independent from BioGeoBEARS. You can do such maps in R, with packages like
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Biogeographic map
Hi! The map is totally independent from BioGeoBEARS. You can do such maps in R, with packages like
Jul 14
rper...@gmail.com
,
Nick Matzke
2
Jun 24
range switching event running DIVA-LIKE without the j parameter
Hi, Assuming no errors in terms of naming models or whatever, a DIVALIKE model without (or even with)
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range switching event running DIVA-LIKE without the j parameter
Hi, Assuming no errors in terms of naming models or whatever, a DIVALIKE model without (or even with)
Jun 24
Viktor Baranov
2
Jun 11
Erorr when loading timeperiods (?)
Resolved - unnoticed space in the adjacency and distances matrices. Apologies for bothering you! On
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Erorr when loading timeperiods (?)
Resolved - unnoticed space in the adjacency and distances matrices. Apologies for bothering you! On
Jun 11
Carme Blanco
,
Nick Matzke
2
May 29
Error_in_stochastic_simulation
Hi -- this error -- the real issue is at the bottom -- looks like one of the places where new R
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Error_in_stochastic_simulation
Hi -- this error -- the real issue is at the bottom -- looks like one of the places where new R
May 29
Nick Matzke
May 8
Fwd: [nmatzke/BioGeoBEARS] fix(optimx): Fix version checking for optimx (PR #14)
Hi all, Some intrepid users figured out a bug that was occurring. I was able to replicate it when I
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Fwd: [nmatzke/BioGeoBEARS] fix(optimx): Fix version checking for optimx (PR #14)
Hi all, Some intrepid users figured out a bug that was occurring. I was able to replicate it when I
May 8
Dora Julieth Chávarro
Apr 25
Trait-dependent dispersal
Hi everyone! I am working on a trait-dependent dispersal analysis with the description of Klaus and
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Trait-dependent dispersal
Hi everyone! I am working on a trait-dependent dispersal analysis with the description of Klaus and
Apr 25
Théo Driancourt
,
Nick Matzke
3
Apr 11
Statistical Comparisons and Adjacency
Apologies for missing these questions. Answers... On Friday, March 22, 2024 at 12:47:50 AM UTC+13
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Statistical Comparisons and Adjacency
Apologies for missing these questions. Answers... On Friday, March 22, 2024 at 12:47:50 AM UTC+13
Apr 11
Nick Matzke
Apr 11
manual states problem / solution
Hi, A user was getting this error when manually modifying the states list: http://phylo.wikidot.com/
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manual states problem / solution
Hi, A user was getting this error when manually modifying the states list: http://phylo.wikidot.com/
Apr 11
Justin Bernstein
,
Nick Matzke
3
Mar 26
BioGeoBEARS changing extant range
Hi -- you are almost certainly just missing some modification to the states_list somewhere. You
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BioGeoBEARS changing extant range
Hi -- you are almost certainly just missing some modification to the states_list somewhere. You
Mar 26
Valentina Todisco
,
Nick Matzke
4
Mar 26
Pie charts colours
On Wednesday, March 27, 2024 at 10:37:47 AM UTC+13 valentin...@gmail.com wrote: In particular it says
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Pie charts colours
On Wednesday, March 27, 2024 at 10:37:47 AM UTC+13 valentin...@gmail.com wrote: In particular it says
Mar 26
Valentina Todisco
, …
Gimo Daniel
7
Mar 11
Installation problem
Hi Gimo, It worked! Thank you so much. Best V Il giorno lun 11 mar 2024 alle ore 09:02 Gimo Daniel
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Installation problem
Hi Gimo, It worked! Thank you so much. Best V Il giorno lun 11 mar 2024 alle ore 09:02 Gimo Daniel
Mar 11
Jonathan Drury
, …
Nick Matzke
24
Mar 4
New update to BioGeoBEARS and stochastic map objects
ie library(devtools) devtools::install_github(repo="nmatzke/BioGeoBEARS", dependencies=
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New update to BioGeoBEARS and stochastic map objects
ie library(devtools) devtools::install_github(repo="nmatzke/BioGeoBEARS", dependencies=
Mar 4
nicolas hazzi
,
Nick Matzke
2
Feb 28
question about trait-dependent dispersal
Hi! For the AIC, you will have to build a table manually in Excel. You can see worked-out AICs etc.
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question about trait-dependent dispersal
Hi! For the AIC, you will have to build a table manually in Excel. You can see worked-out AICs etc.
Feb 28
Yebin Lim
,
Nick Matzke
2
Feb 26
Input error for areas_allowed_fn
Hi - I just got the attached matrix to work on the Psychotria example, in a non-time-stratified
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Input error for areas_allowed_fn
Hi - I just got the attached matrix to work on the Psychotria example, in a non-time-stratified
Feb 26
Shilin He
Feb 19
how to set up colors for areas
Hi everyone, I used the R script from the website of “PhyloWiki” to run an analysis and obtained a
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how to set up colors for areas
Hi everyone, I used the R script from the website of “PhyloWiki” to run an analysis and obtained a
Feb 19
Nick Matzke
11/23/23
package vctrs vs devtools
Hi all, I see I missed a report on these packages having conflicting version numbers or something:
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package vctrs vs devtools
Hi all, I see I missed a report on these packages having conflicting version numbers or something:
11/23/23
Nick Matzke
11/23/23
update: rexpokit 0.26.6.14
Hi all, I fixed one more fortran LTO warning for rexpokit; the new rexpokit 0.26.6.14 is now accepted
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update: rexpokit 0.26.6.14
Hi all, I fixed one more fortran LTO warning for rexpokit; the new rexpokit 0.26.6.14 is now accepted
11/23/23
Nick Matzke
11/21/23
Fwd: [CRAN-pretest-newbies] CRAN Submission rexpokit 0.26.6.14
A new version of rexpokit is going on CRAN, it fixes one remaining warning (LTO) that was occurring
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Fwd: [CRAN-pretest-newbies] CRAN Submission rexpokit 0.26.6.14
A new version of rexpokit is going on CRAN, it fixes one remaining warning (LTO) that was occurring
11/21/23
Natalia Ossa Hernández
,
Ivan Magalhães
2
11/20/23
Transtitions
Hi Natalia, In order to make this kind of inference, first you need to perform biogeographic
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Transtitions
Hi Natalia, In order to make this kind of inference, first you need to perform biogeographic
11/20/23
Sander de Backer
, …
Nick Matzke
7
11/6/23
num_cores_to_use ignored
Thanks for this link, I had forgotten that discussion from mid-pandemic! On Tue, Nov 7, 2023 at 1:27
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num_cores_to_use ignored
Thanks for this link, I had forgotten that discussion from mid-pandemic! On Tue, Nov 7, 2023 at 1:27
11/6/23
Nicole Mitidieri
, …
Nick Matzke
17
11/1/23
Rexpokit removed from CRAN
Sweet! Thank you, Nick! I had a spooky installation following your Github page. I installed "
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Rexpokit removed from CRAN
Sweet! Thank you, Nick! I had a spooky installation following your Github page. I installed "
11/1/23
Nick Matzke
, …
Nicole Mitidieri
3
10/29/23
Fwd: CRAN Submission rexpokit 0.26.6.11
Thank you, Nick! Looking forward to working with BioGeoBEARS. El domingo, 29 de octubre de 2023 a las
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Fwd: CRAN Submission rexpokit 0.26.6.11
Thank you, Nick! Looking forward to working with BioGeoBEARS. El domingo, 29 de octubre de 2023 a las
10/29/23
Alma Melisa Vázquez López
9/4/23
dispersal vs. range expansion
Hi! I ran a basic model of BioGeoBears, is possible with the parameter D infer if the species reached
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dispersal vs. range expansion
Hi! I ran a basic model of BioGeoBears, is possible with the parameter D infer if the species reached
9/4/23