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.NEX UPLOAD DATA

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Daniela Franco

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May 14, 2023, 6:18:38 PM5/14/23
to Biodiverse Users
Hello.
I hope you are well, I am new to using the program. I want to know if I can upload my .nex file to make a phylogeography.

I get an error when I upload the .nex file with the data of all my sequences.
Which file should I upload? One that has already run a phylogeny (ML,BI)?
Should I upload the .contree file?

Shawn Laffan

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May 14, 2023, 6:34:14 PM5/14/23
to biodiver...@googlegroups.com, Daniela Franco
Hello Daniela,

Biodiverse needs to be given a nexus file that already contains one or more phylogenies. 

It will only extract the phylogenies, and will ignore all the other information except a translate block which it uses to adjust names. 

The process of loading the tree is in section 3.3.3 of the quick start guide (version 4.2):
https://github.com/shawnlaffan/biodiverse/wiki/Downloads#quick-start-guide


Regards,
Shawn.


On 15/05/2023 08:18, Daniela Franco wrote:

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Daniela Franco

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May 14, 2023, 6:43:14 PM5/14/23
to Biodiverse Users
Hello Shawn.
Thanks for your response!

I will read the link.


Best,
Daniela.

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