Hi all,
One thing we forgot to talk about yesterday – doing some sort of presentation at BioC2021. The deadline for submissions has been extended to March 16th ( https://bioc2021.bioconductor.org/submissions/). Do we think we will have the Intro to R workshop in good enough shape to present part of it as a long workshop (1.5 – 2 hrs)? That could be a good way to test it out and get lots of feedback. I remember that there often were short talks on a topic with “come to our workshop to learn more” and or we could possibly also put in for a Birds of a Feather for after the workshop to discuss teaching/training issues? I would be happy to take the lead on doing the submission depending on what every thinks we can do.
Best,
Jenny
Jenny Drnevich, Ph.D.
Functional Genomics Bioinformatics Specialist
High Performance Computing in Biology (HPCBio)
and The Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
2112 IGB
1206 W. Gregory Dr.
Urbana, IL 61801
USA
ph: 217-300-6543
fax: 217-265-5066
e-mail: drne...@illinois.edu
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Hi everyone,
I have a draft of the Workshop submission syllabus (html attached). Location on github:
Feel free to edit heavily if you can – it is really rough shape right now and I realized how much work we will need to do not only on developing this “lesson sprint” workshop but also the main Introduction to R workshop. In skimming through the Curriculum Development handbook, the Chapter on Curriculum structure lays out episodes vs. lessons vs. curriculum (https://cdh.carpentries.org/our-curriculum-structure.html). If the Introduction to R is going to be an entire curriculum, then most of our efforts so far have been more focused on the data import, cleaning and visualization. I tried to broaden this out to include a standard data organization and management section. It shouldn’t be that hard to modify these concepts from the Ecology or Genomics curricula to fit our -omics based data set.
Having never submitted to run a BioC workshop before, I am not sure how acceptable this rough syllabus will be. Anyone with experience, please chime in with what area needs to be the main focus for improvement before the submission deadline in approximately 24 hours from now (for me).
Thanks,
Jenny
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On 8 Aug 2021, at 09:24, Charlotte Soneson <charlott...@gmail.com> wrote:
On 8 Aug 2021, at 09:24, Charlotte Soneson <charlott...@gmail.com> wrote:
On 8 Aug 2021, at 09:24, Charlotte Soneson <charlott...@gmail.com> wrote:
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I second moving the meeting time to 3pm CEST! (US CST myself, and it is always difficult to make it so early for me on a Monday).
Thanks,
Jenny
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