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biocommons developers

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Welcome to the biocommons-devs email list!

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Dec 5

Cancelling collective coding

Hi All- I'm going to cancel the collective coding series. However, if anyone ever wants to meet

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Cancelling collective coding

Hi All- I'm going to cancel the collective coding series. However, if anyone ever wants to meet

Dec 5

Dec 5

Re: biocommons devs collective coding

Attendance at collective coding meeting has been slim historically. I'm considering canceling

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Re: biocommons devs collective coding

Attendance at collective coding meeting has been slim historically. I'm considering canceling

Dec 5

Aug 11

Re: biocommons devs collective coding

Sorry all. I now realize that I forgot to email that I was unable to attend today's collective

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Re: biocommons devs collective coding

Sorry all. I now realize that I forgot to email that I was unable to attend today's collective

Aug 11

Jul 14

Biocommons devs collective coding

Hi, For today's meeting, I can provide hackathon updates. I think some of us would also like to

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Biocommons devs collective coding

Hi, For today's meeting, I can provide hackathon updates. I think some of us would also like to

Jul 14

Feb 7

Notes - biocommons devs collective coding (Feb 10, 2025)

Hi All- At this Monday's collective coding, James and I (and you?) will talk about data

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Notes - biocommons devs collective coding (Feb 10, 2025)

Hi All- At this Monday's collective coding, James and I (and you?) will talk about data

Feb 7

8/7/24

Mon 8/12: deep dive into the hgvs package

Over the last two meetings, we've discussed bioutils, uta, and seqrepo. These were all leading up

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Mon 8/12: deep dive into the hgvs package

Over the last two meetings, we've discussed bioutils, uta, and seqrepo. These were all leading up

8/7/24

7/6/24

Response requested: July 8 Technical intro #2: UTA

Okay, we're on for Monday's discussion of UTA. Here's who said yes: Alex Wagner <alex.

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Response requested: July 8 Technical intro #2: UTA

Okay, we're on for Monday's discussion of UTA. Here's who said yes: Alex Wagner <alex.

7/6/24

6/6/24

Next week: Technical intro to the biocommons

As promised, I'm planning on having a technical intro to the biocommons at the next devs meeting

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Next week: Technical intro to the biocommons

As promised, I'm planning on having a technical intro to the biocommons at the next devs meeting

6/6/24

Reece Hart (via Google Docs)

2/12/24

Document shared with you: "Notes - biocommons devs collective coding"

Reece Hart shared a document Reece Hart (re...@harts.net) has invited you to edit the following

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Document shared with you: "Notes - biocommons devs collective coding"

Reece Hart shared a document Reece Hart (re...@harts.net) has invited you to edit the following

2/12/24

10/15/19

biocommons SIG at SF Python

Hi Folks- This email is to the attendees of the biocommons SIG at the SF Python user group meetings.

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biocommons SIG at SF Python

Hi Folks- This email is to the attendees of the biocommons SIG at the SF Python user group meetings.

10/15/19

7/6/19

SFPython Project night on July 17

REMINDER: I can't make the next project night on July 17. Options: Cancel it Use the time among

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SFPython Project night on July 17

REMINDER: I can't make the next project night on July 17. Options: Cancel it Use the time among

7/6/19

5/16/19

hgvs 1.3.0 released

Hi all- hgvs 1.3.0 was released last night. It contains a few new features, mostly experimental. As

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hgvs 1.3.0 released

Hi all- hgvs 1.3.0 was released last night. It contains a few new features, mostly experimental. As

5/16/19

4/24/19

PyBay2019 early bird announcement

Sent on behalf of Grace Law, PyBay Conference Chair and SF Python Organizer Have you heard about

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PyBay2019 early bird announcement

Sent on behalf of Grace Law, PyBay Conference Chair and SF Python Organizer Have you heard about

4/24/19

2/14/19

Meeting next week

Hi folks- We'll be meeting again at project night next week. I'm planning to come to work on

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Meeting next week

Hi folks- We'll be meeting again at project night next week. I'm planning to come to work on

2/14/19

Iskandar Pashayev, Reece Hart4

2/1/19

Covering functions that make network requests

No, tests shouldn't test output unless it's critical. The most important thing to check is

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Covering functions that make network requests

No, tests shouldn't test output unless it's critical. The most important thing to check is

2/1/19

2/1/19

hgvs 1.2.5 is out

hgvs 1.2.5 was just released to pypi. Please see the changelog at https://hgvs.readthedocs.io/en/

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hgvs 1.2.5 is out

hgvs 1.2.5 was just released to pypi. Please see the changelog at https://hgvs.readthedocs.io/en/

2/1/19

1/24/19

Reminder: Migrating to Python 3.6

Reminder: biocommons packages will be migrating to Python 3.6. Here's the plan: https://github.

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Reminder: Migrating to Python 3.6

Reminder: biocommons packages will be migrating to Python 3.6. Here's the plan: https://github.

1/24/19

1/17/19

Summary from last night's meeting

Thanks for all the interest in bioinformatics and biocommons last night! Here's a summary: • The

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Summary from last night's meeting

Thanks for all the interest in bioinformatics and biocommons last night! Here's a summary: • The

1/17/19

12/15/18

biocommons volunteer meeting next week (reply by Dec 16 21:59 GMT/3:59pm PST)

Hi Everyone- At a recent SF Python User Group meeting, a small group of volunteers formed to work on

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biocommons volunteer meeting next week (reply by Dec 16 21:59 GMT/3:59pm PST)

Hi Everyone- At a recent SF Python User Group meeting, a small group of volunteers formed to work on

12/15/18

Reece Hart (via Google Docs)

12/13/18

biocommons agenda+minutes - Invitation to comment

Reece Hart has invited you to comment on the following document: biocommons agenda+minutes Open in

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biocommons agenda+minutes - Invitation to comment

Reece Hart has invited you to comment on the following document: biocommons agenda+minutes Open in

12/13/18

Deena Blumenkrantz

11/2/18

Bio-hacking at SF Python Nov 14, 6-9:30p @Yelp

Hi Biodevs, I posted a comment on the SF Python Meetup Page to describe our group and plan for the

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Bio-hacking at SF Python Nov 14, 6-9:30p @Yelp

Hi Biodevs, I posted a comment on the SF Python Meetup Page to describe our group and plan for the

11/2/18

Deena Blumenkrantz

11/1/18

Link to Google Hangout

Hi Biodevs, To join the google hangout at 8pm tonight (2018-11-01), please use the link in the

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Link to Google Hangout

Hi Biodevs, To join the google hangout at 8pm tonight (2018-11-01), please use the link in the

11/1/18

10/20/18

Hi Folks- I need to head out of town Nov 12-14 and I can't get back in time for our meeting. I

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Hi Folks- I need to head out of town Nov 12-14 and I can't get back in time for our meeting. I

10/20/18

in...@ncbi.nlm.nih.gov

8/15/16

API Guidance for HTTPS transition on 9/30/2016

Dear Colleagues, As we announced on June 10, 2016 (https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-

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API Guidance for HTTPS transition on 9/30/2016

Dear Colleagues, As we announced on June 10, 2016 (https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-

8/15/16

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