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Aug 30, 2018, 8:12:57 AM8/30/18
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NatureVolume 560 Issue 7720
 
THIS WEEK 
 
 
EDITORIAL  
 
 
 
Opening up peer review 
Feeling the pull of gravity 
 
Advertising.
WORLD VIEW  
 
 
 
Research is set up for bullies to thrive 
Sherry Moss
RESEARCH HIGHLIGHTS  
 
 
 
This issue's Research Highlights 
Selections from the scientific literature.
SEVEN DAYS  
 
 
 
Foreign research funds, Australia’s science minister and gene editing in Japan 
 
 
Advertising.
 
 
NEWS IN FOCUS
 
NEWS  
 
 
 
Massive £30-million grant will be awarded to one cardiovascular research team 
Matthew Warren
Trump’s science-adviser pick hedges on climate change 
Sara Reardon
India targets universities in predatory-journal crackdown 
Subhra Priyadarshini
United States woefully unprepared for nuclear strike, say scientists 
Sara Reardon
Physicists doubt bold superconductivity claim following social-media storm 
Davide Castelvecchi
FEATURES  
 
 
 
How to plant a trillion trees 
Rachel Cernansky
 
 
MULTIMEDIA  
 
 
Nature Podcast 30 August 2018
This week, an early mammal relative's babies, and new attempts to pin down the strength of gravity.
 
 
COMMENT
 
COMMENT  
 
 
 
Publish peer reviews 
Jessica K. Polka, Robert Kiley, Boyana Konforti et al.
BOOKS AND ARTS  
 
 
 
Schrödinger’s cat among biology’s pigeons: 75 years of What Is Life? 
Philip Ball
Thinking like a mountain, how we really make decisions, and the power of a button: Books in brief 
Barbara Kiser
Governments want your smart devices to have stupid security flaws 
Steven Aftergood
CORRESPONDENCE  
 
 
 
Together scientists and journalists can spot poor preprints 
James Fraser, Jessica Polka
Preprints are good for science and good for the public 
Sarvenaz Sarabipour
Preprints help journalism, not hinder it 
Jonathan Tennant, Laurent Gatto, Corina Logan
Consumption rebound could undermine border carbon-adjustment charges 
Edward Balistreri, Daniel Kaffine, Hidemichi Yonezawa
A double-edged retirement honour 
David Rickard
OBITUARY  
 
 
 
Burton Richter (1931–2018) 
Helen Quinn
 
 
CAREERS
 
FEATURES  
 
 
 
Help to shape policy with your science 
Julia Rosen
COLUMNS  
 
 
 
Ways to promote and foster collaborative research in your lab 
Katherine D. Kinzler, Kristin Shutts
 
 
FUTURES
 
Unreal 

Judy Helfrich
 
 
RESEARCH
 
NEW ONLINE  
 
 
 
Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling 
Cotranslational assembly is a prevalent mechanism for the formation of oligomeric complexes in Saccharomyces cerevisiae, with one subunit serving as scaffold for the translation of partner subunits. 
Ayala Shiber, Kristina Döring, Ulrike Friedrich et al.
Integrating time from experience in the lateral entorhinal cortex 
Temporal information that is useful for episodic memory is encoded across a wide range of timescales in the lateral entorhinal cortex, arising inherently from its representation of ongoing experience. 
Albert Tsao, Jørgen Sugar, Li Lu et al.
Jurassic stem-mammal perinates and the origin of mammalian reproduction and growth 
A well-preserved clutch of Kayentatherium wellesi perinates sheds light on the timing of the evolution of mammalian traits, including reduced clutch sizes and the allometric lengthening of the face during ontogeny. 
Eva A. Hoffman, Timothy B. Rowe
Role of glutamine synthetase in angiogenesis beyond glutamine synthesis 
The enzyme glutamine synthetase is active in endothelial cell migration during angiogenesis, through autopalmitoylation and the regulation of RHOJ signalling. 
Guy Eelen, Charlotte Dubois, Anna Rita Cantelmo et al.
Acceleration of electrons in the plasma wakefield of a proton bunch 
E. Adli, A. Ahuja, O. Apsimon et al.
A Brownian quasi-crystal of pre-assembled colloidal Penrose tiles 
A lithographic patterning and release method is used to create a dense, fluctuating, Brownian system of mobile colloidal kite- and dart-shaped Penrose tiles over large areas that retains quasi-crystalline order. 
Po-Yuan Wang, Thomas G. Mason
Required growth facilitators propel axon regeneration across complete spinal cord injury 
Stimulating the intrinsic growth capacity of neurons and providing growth-supportive substrate and chemoattraction can allow axon regrowth across anatomically complete spinal cord injuries in adult rodents. 
Mark A. Anderson, Timothy M. O’Shea, Joshua E. Burda et al.
Structures of filaments from Pick’s disease reveal a novel tau protein fold 
The structures of tau filaments from patients with the neurodegenerative disorder Pick’s disease show that the filament fold is different from that of the tau filaments found in Alzheimer’s disease. 
Benjamin Falcon, Wenjuan Zhang, Alexey G. Murzin et al.
Protein complexes assemble as they are being made 
An investigation finds that most protein complexes in yeast cells assemble before the subunits have fully formed. This mechanism might prevent the formation of toxic protein aggregates. 
Christine Mayr
Structural mechanisms of selectivity and gating in anion channelrhodopsins
Crystal structures and molecular simulations of the designed anion-conducting channelrhodopsin iC++ provide molecular insights that enable structure-based design of channelrhodopsins with desirable properties for use as optogenetic tools. 
Hideaki E. Kato, Yoon Seok Kim, Joseph M. Paggi et al.
Crystal structure of the natural anion-conducting channelrhodopsinGtACR1 
The crystal structure of anion channelrhodopsin-1 (ACR1) from the algae Guillardia theta provides insights into the basis of anion conductance. 
Yoon Seok Kim, Hideaki E. Kato, Keitaro Yamashita et al.
Ancient herders enriched and restructured African grasslands 
Isotopic and sedimentary analyses of soils at Pastoral Neolithic archaeological sites in Kenya demonstrate the long-term influence of nutrient enrichment on savannah environments that has accompanied pastoralist settlement over the past three millennia. 
Fiona Marshall, Rachel E. B. Reid, Steven Goldstein et al.
Spotlight on proteins that aid malaria 
The multiprotein complex PTEX enables malaria-causing parasites to survive inside red blood cells. Studies reveal how PTEX assembles, and identify a function for one of the complex’s proteins, EXP2. 
Tania F. de Koning-Ward
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability 
The long non-coding RNA NORAD interacts with proteins involved in DNA replication and repair, and controls the ability of RBMX to form a ribonucleoprotein complex that helps to maintain genomic stability. 
Mathias Munschauer, Celina T. Nguyen, Klara Sirokman et al.
Malaria parasite translocon structure and mechanism of effector export 
Cryo-electron microscopy analysis of the purified Plasmodium translocon of exported proteins (PTEX) reveals two distinct resolved states, suggesting a mechanism by which Plasmodium falciparum exports malarial effector proteins into erythrocytes. 
Chi-Min Ho, Josh R. Beck, Mason Lai et al.
All-inorganic perovskite nanocrystal scintillators 
All-inorganic perovskite nanocrystals containing caesium and lead provide low-cost, flexible and solution-processable scintillators that are highly sensitive to X-ray irradiation and emit radioluminescence that is colour-tunable across the visible spectrum. 
Qiushui Chen, Jing Wu, Xiangyu Ou et al.
Past experience shapes sexually dimorphic neuronal wiring through monoaminergic signalling 
In Caenorhabditis elegans, starvation early in life suppresses later sex-specific pruning of synapses through lasting changes in monoaminergic signalling. 
Emily A. Bayer, Oliver Hobert
Widespread intronic polyadenylation inactivates tumour suppressor genes in leukaemia 
The inactivation of tumour suppressor genes at the level of mRNA occurs by the generation of truncated proteins in leukaemia. 
Shih-Han Lee, Irtisha Singh, Sarah Tisdale et al.
 
NEWS & VIEWS  
 
 
 
Machine learning improves forecasts of aftershock locations 
Gregory C. Beroza
 
Sequence of events in prostate cancer 
Kellie A. Cotter, Mark A. Rubin
 
Role for the longevity protein SIRT6 in primate development 
Shoshana Naiman, Haim Y. Cohen
 

Tissue-based profiling for confident decisions in immuno-oncology
 
Learn how standardizing tissue profiling in drug development and trial designs in immuno-oncology will improve decision making. 
 
Thursday 12th September 2018
 
Sponsored by Definiens
Transcriptional speed bumps revealed in high resolution 
Karen Adelman, Telmo Henriques
Gravity measured with record precision 
Stephan Schlamminger
From the archive 
Improved nutrient use gives cereal crops a boost 
Fanmiao Wang, Makoto Matsuoka
REVIEWS  
 
 
 
Subwavelength integrated photonics 
Subwavelength-grating metamaterial structures, their main operation principles and their implementation in integrated photonic devices are reviewed. 
Pavel Cheben, Robert Halir, Jens H. Schmid et al.
The emergence of Zika virus and its new clinical syndromes 
The rapid development of cell culture and animal models has facilitated a new understanding of ZIKV biology and made it possible to generate multiple ZIKV vaccine candidates, which are advancing through clinical trials. 
Theodore C. Pierson, Michael S. Diamond
ARTICLES  
 
 
 
Measurements of the gravitational constant using two independent methods
The Newtonian gravitational constant is measured with two independent methods, yielding results with relative standard uncertainties of 11.6 parts per million—the lowest uncertainty reported until now. 
Qing Li, Chao Xue, Jian-Ping Liu et al.
5-HT release in nucleus accumbens rescues social deficits in mouse autism model 
Stimulating the release of serotonin (5-HT) in the nucleus accumbens in wild-type mice promotes sociability, and rescues deficits in social behaviours in a mouse model of autism. 
Jessica J. Walsh, Daniel J. Christoffel, Boris D. Heifets et al.
Modulating plant growth–metabolism coordination for sustainable agriculture 
The balance of DELLA and GRF4 proteins in plants ensures the co-regulation of growth with metabolism and tipping this balance towards GRF4 leads to higher efficiency of nitrogen use. 
Shan Li, Yonghang Tian, Kun Wu et al.
Structure of paused transcription complex Pol II–DSIF–NELF 
The cryo-electron microscopy structure of a paused transcription elongation complex of RNA polymerase II bound to DRB sensitivity-inducing factor and negative elongation factor is reported at 3.2 Å resolution. 
Seychelle M. Vos, Lucas Farnung, Henning Urlaub et al.
Structure of activated transcription complex Pol II–DSIF–PAF–SPT6 
The cryo-electron microscopy structure of an activated transcription elongation complex of RNA polymerase II bound to DRB sensitivity-inducing factor and the elongation factors PAF1 complex and SPT6 is reported at 3.1 Å resolution. 
Seychelle M. Vos, Lucas Farnung, Marc Boehning et al.
LETTERS  
 
 
 
The gravitationally unstable gas disk of a starburst galaxy 12 billion years ago 


--
 
Bioclues is an affiliate of Asia Pacific Bioinformatics Network (APBioNet) and 
International Society for Computational Biology (ISCB).


Virtual Post Bioclues

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Sep 6, 2018, 11:57:35 PM9/6/18
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RESEARCH HIGHLIGHTS  
 
 
 
This issue's Research Highlights 
Selections from the scientific literature.

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COMMENT
 
COMMENT  
 
 
 
Five steps to improve air-quality forecasts 
Rajesh Kumar, Vincent-Henri Peuch, James H. Crawford et al.
BOOKS AND ARTS  
 
 
 
A journey through wine, spit and oil 
Derek Lowe
Ode to a tiny porpoise, a kaleidoscopic tour of light, and a visit to the fossil market: Books in brief 
Barbara Kiser
Ribosome reader to Royal Society leader: a biologist’s road to the Nobel 
Georgina Ferry
CORRESPONDENCE  
 
 
 
Gerrymandering: computers are impervious to power, users are not 
Daniel J. Rozell
New York shark bites: DNA result should calm the waters 
Gavin J. P. Naylor
Evaluate power and bias in synthesizing evidence for policy 
Andy Stirling, Clive Mitchell
European politicians must put greater trust in plant scientists 
Josep M. Casacuberta, Pere Puigdomènech
 
 
CAREERS
 
FEATURES  
 
 
 
Why New Zealand is an attractive destination for scientists 
James Mitchell Crow
 
 
FUTURES
 
Failsafes 
Stewart C. Baker
 
 
RESEARCH
 
NEW ONLINE  
 
 
 
A homing system targets therapeutic T cells to brain cancer 
Therapeutic T cells bearing ligands engineered to optimize adhesion and transmigration through the blood–brain barrier can be targeted to brain tumours. 
Heba Samaha, Antonella Pignata, Kristen Fousek et al.
Coupling of bone resorption and formation by RANKL reverse signalling 
Osteoclasts secrete small extracellular vesicles that stimulate osteoblasts, promoting bone formation via receptor activator of nuclear factor-kappa B ligand (RANKL), thereby linking bone formation and resorption. 
Yuki Ikebuchi, Shigeki Aoki, Masashi Honma et al.
Population dynamics of normal human blood inferred from somatic mutations 
Analysis of blood from a healthy human show that haematopoietic stem cells increase rapidly in numbers through early life, reaching a stable plateau in adulthood, and contribute to myeloid and B lymphocyte populations throughout life. 
Henry Lee-Six, Nina Friesgaard Øbro, Mairi S. Shepherd et al.
Receptor becomes a ligand to control bone remodelling 
The protein RANKL is released by bone-forming cells called osteoblasts, and binds to its receptor, RANK, on osteoclast cells to trigger bone removal. It emerges that the pathway can act in reverse to stimulate bone formation. 
Mone Zaidi, Christopher P. Cardozo
Extensive sex differences at the initiation of genetic recombination 
Differential DNA methylation and the long-range effects of chromatin organization lead to pronounced differences in recombination landscape between males and females. 
Kevin Brick, Sarah Thibault-Sennett, Fatima Smagulova et al.
T cells engineered to home in on brain cancer 
Immunotherapies activate T cells to destroy tumours, but the approach has failed in some brain cancers. A strategy to improve migration of T cells across the blood–brain barrier could overcome this limitation. 
Michael Platten
A fluid-to-solid jamming transition underlies vertebrate body axis elongation
Cell collectives in embryonic tissues undergo a fluid-to-solid jamming transition, similar to those that occur in soft materials such as foams, emulsions and colloidal suspensions, to physically sculpt the vertebrate body axis. 
Alessandro Mongera, Payam Rowghanian, Hannah J. Gustafson et al.
Deterministic teleportation of a quantum gate between two logical qubits 
A teleported controlled-NOT gate is realized experimentally between two logical qubits implemented as superconducting cavity quantum memories, thus demonstrating an important tool for universal computation in a quantum modular architecture. 
Kevin S. Chou, Jacob Z. Blumoff, Christopher S. Wang et al.
Superluminal motion of a relativistic jet in the neutron-star merger GW170817 
Emission from the radio counterpart of the gravitation-wave event GW170817 was powered by a wide-angle outflow at early times, but probably dominated by a narrowly collimated jet at later times. 
K. P. Mooley, A. T. Deller, O. Gottlieb et al.
Tissue ‘melting’ sculpts embryo 
Collections of cells in the tails of zebrafish embryos have now been found to transition between behaving as solids and fluids. This transition is responsible for the head-to-tail elongation of the embryo. 
Pierre-François Lenne, Vikas Trivedi
In vivo reprogramming of wound-resident cells generates skin epithelial tissue 
Four transcription factors that specify keratinocyte cell fate, facilitate in vivo reprogramming of wound-resident mesenchymal cells, epithealization and regeneration of skin epithelial tissues in mice. 
Masakazu Kurita, Toshikazu Araoka, Tomoaki Hishida et al.
Hundred-fold enhancement in far-field radiative heat transfer over the blackbody limit 
Rates of radiative heat transfer between sub-wavelength planar membranes are experimentally and theoretically shown to exceed the blackbody limit in the far field by more than two orders of magnitude. 
Dakotah Thompson, Linxiao Zhu, Rohith Mittapally et al.
Precancerous neoplastic cells can move through the pancreatic ductal system 
Comparison of multiple lesions from individual pancreases sheds light on how ancestral clones can spread through the ductal system and give rise to precursor lesions, with acquisition of further mutations leading to pancreatic cancer. 
Alvin P. Makohon-Moore, Karen Matsukuma, Ming Zhang et al.
An orthogonal proteomic survey uncovers novel Zika virus host factors 
Integrative analyses identify host proteins that are modulated by Zika virus at multiple levels and provide a comprehensive framework for the understanding of Zika virus-induced changes to cellular pathways. 
Pietro Scaturro, Alexey Stukalov, Darya A. Haas et al.
Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling 
The plant receptor kinase co-receptor BAK1 contains phosphosites that are required for immune function but not for brassinosteroid-regulated growth in Arabidopsis thaliana; an additional tyrosine phosphosite may be required for the function of many Arabidopsis receptor kinases. 
Artemis Perraki, Thomas A. DeFalco, Paul Derbyshire et al.
 
NEWS & VIEWS  
 
 
 
Jupiter’s magnetic field revealed by the Juno spacecraft 
Chris Jones
 
An immune response with a sweet tooth 
John-Demian Sauer
 
DNA tags used to image sugar-bearing proteins on cells 
Tadashi Suzuki
 
 

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An alternative to controversial pesticides still harms bumblebees 
Nigel E. Raine
Tania F. de Koning-Ward
From the archive 
Designer atom arrays for quantum computing 
Nathan Lundblad
REVIEW  
 
 
 
Facing up to the global challenges of ageing 
Longer human lives have led to a global burden of late-life disease, and so interventions, including changes to lifestyle and medical innovations, are needed to prevent disease and increase late-life health. 
Linda Partridge, Joris Deelen, P. Eline Slagboom
ARTICLES  
 
 
 
Integrating time from experience in the lateral entorhinal cortex 
Temporal information that is useful for episodic memory is encoded across a wide range of timescales in the lateral entorhinal cortex, arising inherently from its representation of ongoing experience. 
Albert Tsao, Jørgen Sugar, Li Lu et al.
Role of glutamine synthetase in angiogenesis beyond glutamine synthesis 
The enzyme glutamine synthetase is active in endothelial cell migration during angiogenesis, through autopalmitoylation and the regulation of RHOJ signalling. 
Guy Eelen, Charlotte Dubois, Anna Rita Cantelmo et al.
Malaria parasite translocon structure and mechanism of effector export 
Cryo-electron microscopy analysis of the purified Plasmodium translocon of exported proteins (PTEX) reveals two distinct resolved states, suggesting a mechanism by which Plasmodium falciparum exports malarial effector proteins into erythrocytes. 
Chi-Min Ho, Josh R. Beck, Mason Lai et al.
LETTERS  
 
 
 
A complex dynamo inferred from the hemispheric dichotomy of Jupiter’s magnetic field 
Maps of Jupiter’s internal magnetic field at a range of depths reveal an unusual morphology, suggesting that Jupiter’s dynamo, unlike Earth’s, does not operate in a thick, homogeneous shell. 
Kimberly M. Moore, Rakesh K. Yadav, Laura Kulowski et al.
Synthetic three-dimensional atomic structures assembled atom by atom 
Arbitrarily shaped, defect-free three-dimensional synthetic structures with up to 72 individually controlled atoms are assembled using holographic methods and moving tweezers. 
Daniel Barredo, Vincent Lienhard, Sylvain de Léséleuc et al.
Sorting ultracold atoms in a three-dimensional optical lattice in a realization of Maxwell’s demon 
An experiment inspired by Maxwell’s ‘demon’ thought experiment uses a series of reversible operations to fully fill a three-dimensional optical lattice with ultracold atoms and realize a low-entropy state. 
Aishwarya Kumar, Tsung-Yao Wu, Felipe Giraldo et al.
All-inorganic perovskite nanocrystal scintillators 
All-inorganic perovskite nanocrystals containing caesium and lead provide low-cost, flexible and solution-processable scintillators that are highly sensitive to X-ray irradiation and emit radioluminescence that is colour-tunable across the visible spectrum. 
Qiushui Chen, Jing Wu, Xiangyu Ou et al.
A Brownian quasi-crystal of pre-assembled colloidal Penrose tiles 
A lithographic patterning and release method is used to create a dense, fluctuating, Brownian system of mobile colloidal kite- and dart-shaped Penrose tiles over large areas that retains quasi-crystalline order. 
Po-Yuan Wang, Thomas G. Mason
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