Re: Frontiers in Genetics - Article Alert

[Virtual Post Bioclues]

Diana Svetlichnaya, Sevda Nuralieva, Alexey Moskalev, and Tamara Filippova AutoEncoder based computational framework for tumor microenvironment decomposition and biomarker identification in metastatic melanoma Chao Cheng, Yanding Zhao, Yadong Dong, and Yongqi Sun Breast Cancer Case Identification Based on Deep Learning and Bioinformatics Analysis DongFang Jia, Cheng Chen, Chen Chen, Fangfang Chen, Ningrui Zhang, Ziwei Yan, and Xiaoyi Lv Comparing Statistical Tests for Differential Network Analysis of Gene Modules Jaron Arbet, Yaxu Zhuang, Elizabeth Litkowski, Laura Saba, and Katerina Kechris Computational Studies of the Structural Basis of Human RPS19 Mutations Associated with Diamond-Blackfan Anemia Ke An, Jing-Bo Zhou, Yao Xiong, Wei Han, Tao Wang, Zhi-Qiang Ye, and Yun-Dong Wu Construction of a circRNA-miRNA-mRNA Regulatory Network Reveals Potential Mechanism and Treatment Options for Osteosarcoma Yi He, Haiting Zhou, Wei Wang, Haoran Xu, and Hao Cheng Differentially expressed genes and enriched signaling pathways in the adipose tissue of obese people Zhenhua Lu, Lingbing Meng, Zhen Sun, Xiaolei Shi, Weiwei Shao, Yangyang Zheng, Xinglei Yao, and Jinghai Song DNA methylation, deamination and translesion synthesis combine to generate footprint mutations in cancer driver genes in B-cell derived lymphomas and other cancers Igor Rogozin, Abiel Roche-Lima, Kathrin Tyrishkin, Kelvin Carrasquillo-Carrion, Artem Lada, Lennard Poliakov, Elena Schwartz, Andreu Saura, Vyacheslav Yurchenko, David Cooper, Anna Panchenko, and Youri Pavlov Elevated expression of PDZD11 is associated with poor prognosis and immune infiltrates in hepatocellular carcinoma Yao Chen, Haifeng Xie, Ting Xie, Xunjun Yang, Yilin Pang, and SongDao Ye Identification of a prognostic signature for ovarian cancer based on the microenvironment genes Xiao Huo, Hengzi Sun, Shuangwu Liu, Bing Liang, Huimin Bai, Shuzhen Wang, and Shuhong Li m6AGE: A Predictor for N6-methyladenosine Sites Identification Utilizing Sequence Characteristics and Graph Embedding-Based Geometrical information Yan Wang, Rui Guo, Lan Huang, Sen Yang, Xuemei Hu, and Kai He

FRONTIERS IN GENETICS (Continued) Section "Computational Genomics" MeImmS: predict clinical benefit of anti-PD-1/PD-L1 treatmants based on DNA methylation in non-small cell lung cancer Shipeng Shang, Xin Li, Yue Gao, Shuang Guo, Dailin Sun, Hanxiao Zhou, Yue Sun, Peng Wang, Hui Zhi, Jing Bai, Shangwei Ning, and Xia Li Multi-omics Data Analyses Construct a Six Immune-Related Genes Prognostic Model for Cervical Cancer in Tumor Microenvironment Fangfang Xu, Jiacheng Shen, and Shaohua Xu Parkinson's disease in Teneurin Transmembrane Protein 4 (TENM4) mutation carriers Jiali Pu, Ting Gao, Xiao-Li Si, Ran Zheng, Jin Chongyao, Yang Ruan, Yi Fang, Ying Chen, Zhe Song, Xin-Zhen Yin, Yaping Yan, Jun Tian, and Baorong Zhang Signatures of Discriminative Copy Number Aberrations in 31 Cancer Subtypes Bo Gao, and Michael Baudis Stable DNA sequence over Close-ending and Pairing Sequences Constraint Xue Li, Ziqi Wei, Bin Wang, and Tao Song Systematic Review on Local Ancestor Inference from a Mathematical and Algorithmic Perspective Yiqiang Zhao, Jie Wu, and Yangxiu Liu Systemic Bioinformatic Analyses of Nuclear-encoded Mitochondrial Genes in Hypertrophic Cardiomyopathy Zhaochong Tan, Limeng Wu, Yan Fang, Pingshan Chen, Rong Wan, Yang Shen, Jianping Hu, Zhenhong Jiang, and Kui Hong The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 expression in Chinese Lung Adenosquamous Carcinoma Yong Cheng, Yanxiang Zhang, Yuwei Yuan, Jiao Wang, Ke Liu, Bin Yu, Li Xie, Chao Ou-Yang, Lin Wu, and Xiao-Qun Ye The unsupervised feature selection algorithms based on standard deviation and cosine similarity for genomic data analysis Juanying Xie, Mingzhao Wang, Sheng-Quan XU, Zhao Huang, and Philip Grant UMIc: a pre-processing method for UMI deduplication and reads correction Maria Tsagiopoulou, Maria Tsagiopoulou, Maria Maniou, Nikolaos Pechlivanis, Michaela Kotrová, Tobias Hutzenlaub, Ilias Kappas, Anastasia Chatzidimitriou, Fotis Psomopoulos, and Fotis Psomopoulos FRONTIERS IN GENETICS Section "Applied Genetic Epidemiology" Appraising the Causal Association of Plasma Homocysteine Levels with Atrial Fibrillation Risk: a Two-sample Mendelian Randomization Study Songzan Chen, Fangkun Yang, Tian Xu, Yao Wang, Kaijie Zhang, Guosheng Fu, and Wenbin Zhang Genetic landscape of rare autoinflammatory disease variants in Qatar and Middle Eastern populations through the integration of whole-genome and exome datasets Parul Sharma, Abhinav Jain, and Vinod Scaria Liver and kidney function biomarkers, blood cell traits and risk of severe COVID-19: a Mendelian randomization study Kai Wang, Minghan Qu, Lin Ding, Xian Shi, Chaolong Wang, Shanshan Cheng, and Xingjie Hao FRONTIERS IN GENETICS Section "Behavioral and Psychiatric Genetics" Transcriptome-wide identification of G-to-A RNA editing in chronic social defeat stress mouse models Jian-Huan Chen, Ji Tao, Chunyan Ren, and Fuquan Zhang FRONTIERS IN GENETICS Section "Statistical Genetics and Methodology" Construction of Condition-Specific Gene Regulatory Network using Kernel Canonical Correlation Analysis Dabin Jeong, Sangsoo Lim, Sangseon Lee, Minsik Oh, Changyun Cho, Hyeju Seong, Woosuk Jung, and Sun Kim Improving genomic prediction using high-dimensional secondary phenotypes Bader Arouisse, Tom Theeuwen, Fred Van Eeuwijk, and Willem Kruijer Investigating the association between environmental factors and asthma using Mendelian randomization: Increased effect of body mass index on adult onset moderate-to-severe asthma subtypes Bermseok Oh, Tae-Woong Ha, Hae Un Jung, Dong Jun Kim, Eun Ju Baek, Won Jun Lee, Ji Eun Lim, Han Kyul Kim, and Ji-One Kang METTL14 acts as a potential regulator of tumor immune and progression in clear cell renal cell carcinoma Tianbo Xu, Su Gao, Hailong Ruan, Jingchong Liu, Yuenan Liu, Di Liu, Junwei Tong, Jian Shi, Hongmei Yang, Ke Chen, and Xiaoping Zhang Polygenic scores and parental predictors: an adult height study based on the UK Biobank and the Framingham Heart Study Chong You, Zhenwei Zhou, Jia Wen, Yun Li, Cheng Pang, Haoyang Du, Ziwen Wang, Xiao-Hua Zhou, Daniel King, Ching-Ti Liu, and Jie Huang FRONTIERS IN GENETICS Section "Cancer Genetics" Comprehensive Profiling Reveals Distinct Microenvironment and Metabolism Characterization of Lung Adenocarcinoma Li Liu, Chang Li, Chen Tian, Yangyang Liu, Jinyan Liang, Yulan Zeng, Yuting Liu, Di Wu, Jingjing Wu, Juan Wang, Kai Zhang, Yue Hu, QIfan Yang, and Feifei Gu Development and Validation of a Hypoxia Related Signature for Predicting Survival Outcomes in Patients with Bladder Cancer Facai Zhang, Xiaoming Wang, Yunjin Bai, Huan Hu, Yubo Yang, Jiahao Wang, Yin Tang, Honggui Ma, Dechao Feng, Dengxiong Li, and Ping Han Identification of tumor microenvironment related prognostic genes in sarcoma Dongjun Dai, Lanyu Xie, Yongjie Shui, Jinfan Li, and Qichun Wei Integrated analyses reveal the multi-omics and prognostic characteristics of ATP5B in breast cancer Min Liu, Yuxuan Xu, Yaoyao Zhou, Ronggang Lang, Zhenyu Shi, Jing Zhao, Yuanyuan Meng, and Li Bao Novel noncoding RNAs analysis in multiple myeloma identified through high-throughput sequencing Minqiu Lu, YIN WU, Wen Gao, Ying Tian, Guorong Wang, Aijun Liu, and Wenming Chen PLAU promotes cell proliferation and epithelial-mesenchymal transition in head and neck squamous cell carcinoma Lili Chen, Qingming Tang, Guangjin Chen, Jiwei Sun, Mengru Xie, and Shaoling Yu Stromal score-based gene signature: a prognostic prediction model for colon cancer Jing Jia, Yuhan Dai, Qing Zhang, Peiyu Tang, Qiang Fu, and Guanying Xiong FRONTIERS IN GENETICS Section "Systems Biology Archive" Aluminum or low pH – which is the bigger enemy of barley? Transcriptome analysis of barley root meristem under Al and low pH stress Miriam Szurman-Zubrzycka, Karolina Chwialkowska, Magdalena Niemira, Mirosław Kwaśniewski, Małgorzata Nawrot, Monika Gajecka, Paul Larsen, and Iwona Szarejko DriverSubNet: A novel algorithm for identifying cancer driver genes by subnetwork enrichment analysis Yannan Bin, and Di Zhang Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus Shany Ofaim, Snorre Sulheim, Daniel Sher, and Daniel Segrè Explore the underlying mechanism between atopic dermatitis and major depressive disorder Tao Yang, Xuehua Huang, Jiajun Xu, Mingjing Situ, Qingqing Xiao, Kamil Can Kural, and Yan Kang Identification of Rice Blast Loss-of-function Mutant Alleles in the Wheat Genome as a New Strategy for Wheat Blast Resistance Breeding Huijun Guo, Qidi Du, Yongdun Xie, Hongchun Xiong, Linshu Zhao, Jiayu Gu, Shirong Zhao, Xiyun Song, Tofazzal Islam, and Luxiang Liu Machine learning assisted prediction of prognostic biomarkers associated with COVID-19, using clinical and proteomics data Dinesh Gupta, Rahila Sardar, and Arun Sharma Multi-omics analysis reveals molecular abnormalities in granulosa cells of women with polycystic ovary syndrome Rusong Zhao, Yonghui Jiang, Shigang Zhao, and Han Zhao Reconstruction of Litopenaeus vannamei Genome-Scale Metabolic Network model and nutritional requirements analysis of different shrimp commercial varieties Chenchen Gao, Jiarui Yang, Tong Hao, Jingjing Li, and Jinsheng Sun FRONTIERS IN GENETICS Section "Pharmacogenetics and Pharmacogenomics" Genetic markers for Stevens-Johnson syndrome/toxic epidermal necrolysis in the Asian Indian population: implications on prevention Swapna Shanbhag, Pragnya Donthineni, Vivek Singh, and Sayan Basu FRONTIERS IN GENETICS Section "Stem Cell Research" Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients Jun Tan, Guihua Tang, Wen Yin, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, and Xingjun Jiang FRONTIERS IN GENETICS Section "Genetics of Common and Rare Diseases" A variant non-ketotic hyperglycinemia with GLRX5 mutations：manifestation of deficiency of activities of the respiratory chain enzymes Weixing Feng, Xiu-wei Zhuo, Zhimei Liu, Jiuwei Li, Wei-hua Zhang, Yun Wu, Tong-li Han, and Fang Fang Aicardi-Goutières Syndrome and Singleton-Merten Syndrome: Two Syndromes Caused by IFIH1 gain-of-function Mutation Wei Xiao, Jie Feng, Hongyu Long, Bo Xiao, and Zhaohui Luo Case report: a novel heterozygous ZP3 deletion associated with empty follicle syndrome and abnormal follicular development Yongzhe Chen, Zesong Wang, Wenbin He, Juan Du, Sufen Cai, Yueren Wu, Fei Gong, Guangxiu Lu, Ge Lin, and Can Dai DEPTOR in skeletal development and diseases José Pérez Tejeiro, and Fabiana Csukasi Four new cases of SLC35A2-CDG with novel mutations and clinical features Kuerbanjiang Abuduxikuer, and Jian-She WANG Genetic analysis using a next generation sequencing-based gene panel in patients with skeletal dysplasia: a single-center experience Su Jin Kim, Sae-Mi Lee, Jong-Moon Choi, Ja-Hyun Jang, Hyun Gi Kim, Jung-Taek Kim, Jae Ho Cho, and Young Bae Sohn Identification and tissue-specific characterization of novel SHOX-regulated genes in zebrafish highlights SOX family members among other genes Sandra Hoffmann, Ralph Roeth, Sabrina Diebold, Jasmin Gogel, David Hassel, Steffen Just, and Gudrun Rappold Identification of a de novo microdeletion 1q44 in a patient with seizures and developmental delay Gang Zhang, Yiehen Tung, Haiying Lu, Wenxin Lin, Samuel Kim, Guo Hu, Guo Zheng, and Tingting Huang Identification of a Novel Variant in MT-CO3 Causing MELAS Manting Xu, Robert Kopajtich, Matthias Elstner, Zhaoxia Wang, Zhimei Liu, Junling Wang, Holger Prokisch, and Fang Fang Next-Generation Sequencing in Newborn Screening: A Review of Current State Žiga Remec, Katarina Trebušak Podkrajšek, Barbka Repic Lampret, Jernej Kovac, Urh Groselj, Tadej Battelino, and Marusa Debeljak Omics profiling of S2P mutant fibroblasts as a mean to unravel the pathomechanism and molecular signatures of X-linked MBTPS2 Osteogenesis Imperfecta Pei Jin Lim, Severin Marfurt, Uschi Lindert, Lennart Opitz, Timothée Ndarugendamwo, Srikanthan Pakeerathan, Martin Poms, Martin Hersberger, Claus-Dieter Langhans, Dorothea Haas, Marianne Rohrbach, and Cecilia Giunta Prenatal genetic counseling in a Chinese pregnant woman with rare thalassemia: a case report Liangying Zhong, Ye Wang, Wenbin Lin, Zhenrong Yao, Jiang Zhang, Hongxu Xu, Pinning Feng, and Lijuan Xu Whole-exome sequencing reveals rare germline mutations in patients with hemifacial microsomia Xiaojun Chen, Fatao Liu, ZIN MAR AUNG, Yan Zhang, and Gang Chai FRONTIERS IN GENETICS Section "Human and Medical Genomics" A rare truncating variant of the CFHR5 gene in IgA nephropathy Gabriella Guzzo, Salima Sadallah, Heidi Fodstad, Jean-Pierre Venetz, Samuel Rotman, Daniel Teta, Thierry Gauthier, Giuseppe Pantaleo, Andrea Superti-Furga, and Manuel Pascual Association of Extracellular Signal-Regulated Kinase Genes With Myopia: A Longitudinal Study of Chinese Children Haishao Xiao, Shudan Lin, Dandan Jiang, Yaoyao Lin, Linjie Liu, Qiqi Zhang, Juan He, and Yanyan Chen From disease description and gene discovery to functional cell pathway: a decade-long journey for TMCO1 Helen Batchelor-Regan, Bao Xin, Aimin Zhou, Heng Wang, and Heng Wang Haplotype Shuffling and Dimorphic Transposable Elements in the Human Extended MHC Class II Region Jerzy Kulski, Shingo Suzuki, and Takashi Shiina Identification of potential pathogenic super-enhancers-driven genes in pulmonary fibrosis Hang Li, Caiping Zhao, Zeli Li, Jingjing Zhang, Wenwen Si, Xiaohong Liu, Yong Jiang, and Meiling Zhu Identification of Prognostic Biomarkers and Correlation with Immune Infiltrates in Hepatocellular Carcinoma Based on a Competing Endogenous RNA Network Zhangya Pu, Yuanyuan Zhu, Xiaofang Wang, Yun Zhong, Yiya Zhang, and Fang Peng Renal and skeletal anomalies in a cohort of individuals with clinically presumed hereditary nephropathy analyzed by molecular genetic testing Michaela Stippel, Korbinian Riedhammer, Bärbel Lange-Sperandio, Michaela Geßner, Matthias Braunisch, Roman Günthner, Martin Bald, Miriam Schmidts, Peter Strotmann, Velibor Tasic, Christoph Schmaderer, Lutz Renders, Uwe Heemann, and Julia Hoefele Research on prognostic genes of patients with Ewing's sarcoma based on immune microenvironment Yangfan Zhou, shusheng wu, yulian liu, and bin Xu FRONTIERS IN GENETICS Section "Genomic Medicine" Copy number variations analysis identifies QPRT as a candidate gene associated with susceptibility for solitary functioning kidney Xiaoyan Zhou, Haoyu Zheng, Li Han, Yan Wang, Li Zhang, Xiaoming Shu, Muling Zhang, Guannan Liu, and Lianshu Ding Development and validation of a novel metabolic-related signature predicting overall survival for pancreatic cancer Junyu Huo, Liqun Wu, and Yunjin Zang Identification of hub genes and immune infiltration in psoriasis by bioinformatic methods Wenxing Su, Jiang Ji, Yuqian Wei, and Biao Huang TRPM2, PDLIM5, BCL3, CD14, GBA genes as feasible markers for premature coronary heart disease risk Kriengchai Prasongsukarn, Wilanee Dechkhajorn, Surachet Benjathummarak, and Yaowapa Maneerat Two novel compound heterozygous mutations in the TRAPPC9 gene reveal a connection of non-syndromic intellectual disability and autism spectrum disorder Johannes Krämer, Meinrad Beer, Benedikt Winter, and Harald Bode