New articles from eLife – January 24, 2022

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Jan 24, 2022, 11:32:38 PM1/24/22
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January 24, 2022

New articles from eLife

 

 

Find out about submitting to a Special Issue: The impact of COVID-19 on cancer prevention, control, care and survivorship

MAGAZINE

NEUROSCIENCE

Overwriting the past with supervised plasticity

Xingyun Wang, Richard Naud

Triggered activity bursts in place cells can increase and decrease the strength of some inputs.

IMMUNOLOGY AND INFLAMMATION

What triggers inflammation in COVID-19?

Tomohiro Sawa, Takaaki Akaike

The spike protein of SARS-CoV-2 triggers macrophages and epithelial cells to produce excess levels of pro-inflammatory molecules, which can do more harm than good.

EVOLUTIONARY BIOLOGYGENETICS AND GENOMICS

Why do sunflowers have invisible colors?

Jason Laurich, Anna M O'Brien

In the common sunflower, patterns of UV-absorbing pigments are controlled by a newly identified regulatory region and may be under the influence of environmental factors.

LATEST RESEARCH

CHROMOSOMES AND GENE EXPRESSIONDEVELOPMENTAL BIOLOGY

Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos

Graham JM Hickey, Candice L Wike ... Bradley R Cairns

Zebrafish early embryos initially package their developmental genes and enhancers in 'active' chromatin that subsequently receives polycomb repressive complex 1 (PRC1)-mediated histone H2A ubiquitylation, which confers silencing/poising – prior to Aebp2-PRC2-guided H3K27me3 addition.

IMMUNOLOGY AND INFLAMMATION

Fine-tuning of β-catenin in mouse thymic epithelial cells is required for postnatal T-cell development

Sayumi Fujimori, Izumi Ohigashi ... Shinji Takada

Highly specific gene manipulation in mouse thymic epithelial cells (TECs) shows that fine-tuning of β-catenin expression is required for TECs to generate an optimal thymic microenvironment to support T-cell development.

EVOLUTIONARY BIOLOGYNEUROSCIENCE

Connexins evolved after early chordates lost innexin diversity

Georg Welzel, Stefan Schuster

An in silico analysis of gap junction proteins supports the hypothesis that connexins replaced the primordial innexins in chordate gap junctions due to an evolutionary bottleneck.

NEUROSCIENCE

The landscape of regulatory genes in brain-wide neuronal phenotypes of a vertebrate brain

Hui Zhang, Haifang Wang ... Jie He

Single-cell transcriptomes of larval zebrafish whole brain shed light on the multidimensional landscapes of transcription factors and post-transcriptional regulators in vertebrate whole-brain neuronal classification and revealed principles of how neuronal cell diversity develops and evolves.

ECOLOGYEPIDEMIOLOGY AND GLOBAL HEALTH

Both consumptive and non-consumptive effects of predators impact mosquito populations and have implications for disease transmission

Marie C Russell, Catherine M Herzog ... Andrew C McCall

While predators can clearly reduce mosquito populations by consumption, they can also have non-consumptive effects on mosquito body size and oviposition behavior, and these effects on vector traits can influence infectious disease dynamics.

NEUROSCIENCE

Bidirectional synaptic plasticity rapidly modifies hippocampal representations

Aaron D Milstein, Yiding Li ... Sandro Romani

Dendritic calcium spikes translocate hippocampal place fields by inducing a non-Hebbian form of bidirectional synaptic plasticity that operates over a seconds-long timescale called behavioral timescale synaptic plasticity.

CELL BIOLOGYMICROBIOLOGY AND INFECTIOUS DISEASE

Absolute quantitation of individual SARS-CoV-2 RNA molecules provides a new paradigm for infection dynamics and variant differences

Jeffrey Y Lee, Peter AC Wing ... Ilan Davis

Single-molecule analysis of SARS-CoV-2 RNA identifies significant heterogeneity in cellular viral RNA levels and highlights slower replication kinetics for the Alpha variant compared to the Victoria strain.

IMMUNOLOGY AND INFLAMMATION

ACE2 is the critical in vivo receptor for SARS-CoV-2 in a novel COVID-19 mouse model with TNF- and IFNγ-driven immunopathology

Riem Gawish, Philipp Starkl ... Sylvia Knapp

Only three Spike mutations enable murine SARS-CoV-2 infection, which is still strictly ACE2 dependent and causes a COVID-19-like disease in mice with immunopathology-driven lung damage.

DEVELOPMENTAL BIOLOGY

ZAF, the first open source fully automated feeder for aquatic facilities

Merlin Lange, AhmetCan Solak ... Loïc Alain Royer

ZAF (Zebrafish Automated Feeder) is the first fully automated, easy to build, and open source fish feeder designed for small and medium sized labs of which there are an estimated 3250 in 100 countries working with Zebrafish alone today.

MEDICINE

ACE2 pathway regulates thermogenesis and energy metabolism

Xi Cao, Ting-Ting Shi ... Jin-Kui Yang

A series of functional assays in mouse models and primary brown adipocytes confirm that the ACE2 pathway regulates glucose and lipid homeostasis, and maintains thermogenesis and systemic energy metabolism by both the Akt and PKA signaling.

NEUROSCIENCESTRUCTURAL BIOLOGY AND MOLECULAR BIOPHYSICS

Molecular structures and conformations of protocadherin-15 and its complexes on stereocilia elucidated by cryo-electron tomography

Johannes Elferich, Sarah Clark ... Eric Gouaux

Direct imaging of individual molecules of the tip-link protein PCDH15 in mouse stereocilia shows that it assembles as a dimer, forms complexes that span stereocilia, and occurs in clusters with multiple copies of the PCDH15 dimer.

IMMUNOLOGY AND INFLAMMATIONMICROBIOLOGY AND INFECTIOUS DISEASE

Transcriptional correlates of malaria in RTS,S/AS01-vaccinated African children: a matched case–control study

Gemma Moncunill, Jason Carnes ... Raphael Gottardo

Prevaccination levels of transcriptional modules related to monocytes, dendritic cells, and other immune categories correlate with clinical malaria risk in RTS,S/AS01E-vaccinated African children, suggesting that certain monocyte subsets may inhibit RTS,S/AS01E-induced protective responses.

ECOLOGYPLANT BIOLOGY

Wild cereal grain consumption among Early Holocene foragers of the Balkans predates the arrival of agriculture

Emanuela Cristiani, Anita Radini ... Dušan Borić

A consistent pattern of consumption of Triticeae tribe grasses documented in the Danube Gorges of the Balkans since the Early Mesolithic might have facilitated a quick uptake of domesticated cereals due to a developed cultural taste and specific stone tool processing technology.

PHYSICS OF LIVING SYSTEMS

Emergence of behaviour in a self-organized living matter network

Philipp Fleig, Mirna Kramar ... Karen Alim

Behavioural states emerge from variability in the complexity of underlying active contraction dynamics in a single-cell, network-shaped forager.

NEUROSCIENCE

Global organization of neuronal activity only requires unstructured local connectivity

David Dahmen, Moritz Layer ... Moritz Helias

Short-ranged and random connectivity are sufficient to explain complex, long-range activity patterns observed in macaque motor cortex that are, moreover, flexibly adaptable to behavior.

EVOLUTIONARY BIOLOGYSTEM CELLS AND REGENERATIVE MEDICINE

A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice

Michael J Abrams, Fayth Hui Tan ... Lea Goentoro

Amino acid and sugar supplement induce appendage/limb regeneration in cnidarians, insects, and mammals.

CELL BIOLOGYIMMUNOLOGY AND INFLAMMATION

SNX9-induced membrane tubulation regulates CD28 cluster stability and signalling

Manuela Ecker, Richard Schregle ... Jeremie Rossy

Sorting nexin 9, a membrane curvature inducing protein, creates a distinct environment within clusters of the co-receptor CD28 and thereby allows T cell activation to proceed to a successful outcome.

STRUCTURAL BIOLOGY AND MOLECULAR BIOPHYSICS

Nanofluidic chips for cryo-EM structure determination from picoliter sample volumes

Stefan T Huber, Edin Sarajlic ... Arjen J Jakobi

A novel strategy for reproducible cryo-EM sample preparation with minimal sample volumes.

DEVELOPMENTAL BIOLOGYNEUROSCIENCE

Myelinating Schwann cells and Netrin-1 control intra-nervous vascularization of the developing mouse sciatic nerve

Sonia Taïb, Noël Lamandé ... Isabelle Brunet

Angiogenesis and vascular development within peripheral nerve is regulated by Netrin-1, Schwann cells, and myelination.

IMMUNOLOGY AND INFLAMMATIONMEDICINE

Effects of IFIH1 rs1990760 variants on systemic inflammation and outcome in critically ill COVID-19 patients in an observational translational study

Laura Amado-Rodríguez, Estefania Salgado del Riego ... Guillermo M Albaiceta

Patients with different rs1990760 variants have a differential inflammatory response to severe SARS-CoV-2 infections, so that those with a TT genotype have an attenuated systemic inflammation and may not benefit from steroid therapy.

NEUROSCIENCE

Open-source, Python-based, hardware and software for controlling behavioural neuroscience experiments

Thomas Akam, Andy Lustig ... Mark E Walton

pyControl is an open-source tool that makes it easy to specify complex behavioural tasks, run them at scale on low-cost hardware, and communicate task logic to other researchers.

NEW ACCEPTED MANUSCRIPTS

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