Re: [biocellion-support] version GLIBCXX_3.4.21 not defined in file libstdc++.so.6

[Seunghwa Kang]

Can I get little more detail about your test system?

Which distribution and version of Linux are you using? You may type "uname -a" to find this.

Which version of g++ are you using? Or are you using Intel icpc? You can type "g++ -v" to find this.

Are you using biocellion.1.2.public.release.gcc.4.x.or.earlier.tar.gz or biocellion.1.2.public.release.gcc.5.x.or.later.tar.gz?

Thank you very much,

-seunghwa

On Mon, Oct 16, 2017 at 8:34 AM, <kieran...@york.ac.uk> wrote:

Hi,
Trying to run BioCellion 1.2, but am getting the following error:
./biocellion.DP.SPAGENT.OPT: relocation error: /home/Documents/biocellion/BIOCELLION_RELEASE/biocellion/framework/main/../librt/librt.DP.SPAGENT.OPT.so: symbol _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEED1Ev, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference

Have tried suggested gcc4.9 fixes on stackoverflow but am not getting anywhere. Does anyone here have any ideas on how to fix this?

Thanks

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[seunghwa.kang]

And have you tried the following?

https://stackoverflow.com/questions/36816570/glibcxx-3-4-21-not-defined-in-file-libstdc-so-6-with-link-time-reference

There was an interface change as gcc version moves from 4 to 5.

My rough guess is that this is a version compatibility issue. If you're using an older version of Linux and gcc 4.x or earlier, you need to use Biocellion complied for gcc.4.x or earlier. If you're using a newer version of Linux and gcc 5.x or later, you need to use Biocellion complied for gcc 5.x or later. Things may get little complicated if you're using an older Linux and gcc 5.x or later or a newer Linux with gcc 4.x or earlier but I wish a newer Linux may comes with a newer gcc or you can install a newer gcc.

-seunghwa