PDB RDB on BiO.CC updated

[Dan Bolser]

As a test I have updated the PDB relational database on BiO.CC

Previously...
...
Loading PDB_ID: 9xim
Read time: 0.475 s. Load time: 1.702 s. Entry_key: 69650

69650 entries loaded. Fri Dec 10 10:36:11 KST 2010
Total time = 52:01:56 Time per entry = 2.689
Load list_file Done.


Today...
...
Loading PDB_ID: 9xim
Read time: 0.478 s. Load time: 3.50 s. Entry_key: 69636

69636 entries loaded. Mon Jan 10 19:18:07 KST 2011
Total time = 44:54:16 Time per entry = 2.321
Load list_file Done.



Not sure why the number of PDB's went down over Xmas...

[Henning Stehr]

Hmm...

pdb.org 70303
talyn 70303
pdbwiki.org 70230
bio.cc 69650?

Isn't pdbwiki being updated from bio.cc?

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[Jose M. Duarte]

On 10 January 2011 11:40, Henning Stehr <st...@molgen.mpg.de> wrote:

Hmm...

pdb.org 70303
talyn 70303
pdbwiki.org 70230
bio.cc 69650?

Isn't pdbwiki being updated from bio.cc?

Not yet, the update still runs from molgen.

Thanks Dan for doing the update, I'm going to do another test run of the update pipeline with that new version.

Anyway weird that the number went down, could that be because the rsync didn't work properly?

Jose

[Dan Bolser]

Maybe. Unfortunately the cronjob still isn't emailing the list. I'll
switch to a file logged cronjob, so we can check the output. Here is
the new crontab entry:

45 11 * * 3 /BiO/Store/DB/PDB/update.sh > /BiO/Store/DB/PDB/update.log

I'll also run that now.

Cheers,
Dan.

> Jose
>
>