[biocaml/biocaml] ac6195: Merge pull request #181 from biocaml/modernize

[Ashish Agarwal]

Branch: refs/heads/main
Home: https://github.com/biocaml/biocaml
Commit: ac619539fed348747d686b8f628e80c1bb8bfc59
https://github.com/biocaml/biocaml/commit/ac619539fed348747d686b8f628e80c1bb8bfc59
Author: Ashish Agarwal <ash...@solvuu.com>
Date: 2022-08-31 (Wed, 31 Aug 2022)

Changed paths:
M .gitignore
A .ocamlformat
M Makefile
M app/biocaml_run_benchmarks.ml
M app/biocaml_run_tests.ml
M app/dune
M dune-project
M lib/async/dune
M lib/async/fastq.ml
M lib/async/future_async.ml
M lib/async/future_async.mli
M lib/async/lines.ml
M lib/async/sam.ml
M lib/base/bed.ml
M lib/base/bed.mli
M lib/base/dune
M lib/base/fasta.ml
M lib/base/fasta.mli
M lib/base/gff.ml
M lib/base/gff.mli
M lib/base/line.ml
M lib/base/line.mli
M lib/base/lines.ml
M lib/base/lines.mli
M lib/base/macs2.ml
M lib/base/macs2.mli
M lib/base/table.ml
M lib/base/ucsc_genome_browser.ml
M lib/base/ucsc_genome_browser.mli
M lib/benchmark/line_split.ml
M lib/ez/bam.ml
M lib/ez/dune
M lib/ez/fasta.ml
M lib/ez/fastq.ml
M lib/ez/lines.ml
M lib/ez/lines.mli
M lib/ez/phred_score.ml
M lib/ez/range.ml
M lib/ez/roman_num.ml
M lib/ez/sam.ml
M lib/ez/seq_range.ml
M lib/ez/strand.ml
M lib/lwt/dune
M lib/lwt/fastq.ml
M lib/lwt/future_lwt.ml
M lib/lwt/future_lwt.mli
M lib/lwt/lines.ml
M lib/lwt/sam.ml
M lib/test/bam.ml
M lib/test/bed.ml
M lib/test/bgzf.ml
M lib/test/bin_pred.ml
M lib/test/biocaml_test_zip.ml
M lib/test/dune
M lib/test/fasta.ml
M lib/test/gff.ml
M lib/test/interval_tree.ml
M lib/test/line.ml
M lib/test/lines.ml
M lib/test/phred_score.ml
M lib/test/pwm.ml
M lib/test/rSet.ml
M lib/test/roman_num.ml
M lib/test/sam.ml
M lib/test/suite.ml
M lib/test/table.ml
M lib/test/track.ml
M lib/test/ucsc_genome_browser.ml
M lib/test/utils.ml
M lib/test/vcf.ml
M lib/test/wig.ml
M lib/unix/accu.ml
M lib/unix/accu.mli
M lib/unix/bam.ml
M lib/unix/bam.mli
M lib/unix/bamstats.ml
M lib/unix/bamstats.mli
M lib/unix/bar.ml
M lib/unix/bar.mli
M lib/unix/bed.ml
M lib/unix/bed.mli
M lib/unix/bgzf.ml
M lib/unix/bgzf.mli
M lib/unix/bin_pred.ml
M lib/unix/bin_pred.mli
M lib/unix/biocaml_result.ml
M lib/unix/biocaml_result.mli
M lib/unix/bpmap.ml
M lib/unix/bpmap.mli
M lib/unix/cel.ml
M lib/unix/cel.mli
M lib/unix/chr.ml
M lib/unix/chr.mli
M lib/unix/dune
M lib/unix/entrez.ml
M lib/unix/entrez.mli
M lib/unix/fasta.ml
M lib/unix/fasta.mli
M lib/unix/fastq.ml
M lib/unix/fastq.mli
M lib/unix/file_mapper.ml
M lib/unix/file_mapper.mli
M lib/unix/future.ml
M lib/unix/future_unix.ml
M lib/unix/future_unix.mli
M lib/unix/genomeMap.ml
M lib/unix/genomeMap.mli
M lib/unix/gff.ml
M lib/unix/gff.mli
M lib/unix/histogram.ml
M lib/unix/histogram.mli
M lib/unix/interval_tree.ml
M lib/unix/interval_tree.mli
M lib/unix/iset.ml
M lib/unix/iset.mli
M lib/unix/jaspar.ml
M lib/unix/jaspar.mli
M lib/unix/lines.ml
M lib/unix/lines.mli
M lib/unix/math.ml
M lib/unix/math.mli
M lib/unix/msg.ml
M lib/unix/msg.mli
M lib/unix/mzData.ml
M lib/unix/mzData.mli
M lib/unix/phred_score.ml
M lib/unix/phred_score.mli
M lib/unix/pos.ml
M lib/unix/pos.mli
M lib/unix/psl.ml
M lib/unix/psl.mli
M lib/unix/pwm.ml
M lib/unix/pwm.mli
M lib/unix/rSet.ml
M lib/unix/rSet.mli
M lib/unix/range.ml
M lib/unix/range.mli
M lib/unix/roman_num.ml
M lib/unix/roman_num.mli
M lib/unix/sam.ml
M lib/unix/sam.mli
M lib/unix/sbml.ml
M lib/unix/sbml.mli
M lib/unix/seq.ml
M lib/unix/seq.mli
M lib/unix/seq_range.ml
M lib/unix/seq_range.mli
M lib/unix/sgr.ml
M lib/unix/sgr.mli
M lib/unix/solexa_score.ml
M lib/unix/solexa_score.mli
M lib/unix/strand.ml
M lib/unix/strand.mli
M lib/unix/table.ml
M lib/unix/table.mli
M lib/unix/tfxm.ml
M lib/unix/tfxm.mli
M lib/unix/track.ml
M lib/unix/track.mli
M lib/unix/transcripts.ml
M lib/unix/transcripts.mli
M lib/unix/vcf.ml
M lib/unix/vcf.mli
M lib/unix/wig.ml
M lib/unix/wig.mli
M lib/unix/zip.ml
M lib/unix/zip.mli
M src/app/biocaml_app_common.ml
M src/app/biocaml_app_entrez.ml
M src/benchmarks/bam_sam_and_the_gc.ml
M src/benchmarks/benchmark_zip.ml
M src/doc/biocaml.css
M src/odoc/biohtml.ml
M src/tmp/biocaml_app_bed_operations.ml
M src/tmp/biocaml_app_count_alignments.ml
M src/tmp/biocaml_app_demux.ml
M src/tmp/biocaml_app_main.ml
M src/tmp/biocaml_app_random.ml
M src/tmp/biocaml_app_transform.ml
M src/tmp/biocaml_fasta.ml
M src/tmp/biocaml_fasta.mli
M src/tmp/biocaml_tags.ml
M src/tmp/biocaml_tags.mli
M src/tmp/test_fasta.ml
M src/top/biocaml_toplevel.ml

Log Message:
-----------
Merge pull request #181 from biocaml/modernize

Format code and update Makefile