biocaml

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Official Google group for Biocaml users and developers.

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3/23/16

Fwd: Us congress hearing of maan alsaan Money laundry قضية الكونغجرس لغسيل الأموال للمليادير معن الصانع

YouTube videos of US Congress money laundering hearing of Saudi Billionaire " Maan Al sanea

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Fwd: Us congress hearing of maan alsaan Money laundry قضية الكونغجرس لغسيل الأموال للمليادير معن الصانع

YouTube videos of US Congress money laundering hearing of Saudi Billionaire " Maan Al sanea

3/23/16

3/6/16

Line split benchmark

Hi everyone, I've just pushed a small benchmark on line splitting, comparing core, sosa and

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Line split benchmark

Hi everyone, I've just pushed a small benchmark on line splitting, comparing core, sosa and

3/6/16

Philippe Veber, Ashish Agarwal3

2/24/16

Biocaml compilation.

I've just merged the solvuu_build branch to master. I think the repo is now ready to receive new

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Biocaml compilation.

I've just merged the solvuu_build branch to master. I think the repo is now ready to receive new

2/24/16

Philippe Veber, Ashish Agarwal6

8/26/14

Progress report on alternative BAM parser.

On Tue, Aug 26, 2014 at 1:38 AM, Philippe Veber I'm ok with this general plan, but have not

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Progress report on alternative BAM parser.

On Tue, Aug 26, 2014 at 1:38 AM, Philippe Veber I'm ok with this general plan, but have not

8/26/14

Ashish Agarwal, Philippe Veber7

7/30/14

replace Stream with Sequence

I think we had two benefits for switching to core's sequence: - remove one dependence and maybe

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replace Stream with Sequence

I think we had two benefits for switching to core's sequence: - remove one dependence and maybe

7/30/14

6/5/14

Re: [biocaml] Range: make now returns Or_error and clean up (080d673)

(Moving discussion to mailing list.) This is a good example that helps us evaluate one of our

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Re: [biocaml] Range: make now returns Or_error and clean up (080d673)

(Moving discussion to mailing list.) This is a good example that helps us evaluate one of our

6/5/14

Philippe Veber, Ashish Agarwal3

6/5/14

opam file and version constraints on core

Thanks Ashish! I install biocaml@master myself, I just noticed that while showing biocaml to a

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opam file and version constraints on core

Thanks Ashish! I install biocaml@master myself, I just noticed that while showing biocaml to a

6/5/14

Philippe Veber, … Ashish Agarwal19

6/4/14

Error handling guidelines.

Yes please proceed, and let's talk on this on irc. 2014-06-02 18:51 GMT+02:00 Ashish Agarwal <

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Error handling guidelines.

Yes please proceed, and let's talk on this on irc. 2014-06-02 18:51 GMT+02:00 Ashish Agarwal <

6/4/14

5/25/14

Preparing BOSC.

Hi everyone, Thanks to Ashish, we'll soon have a slot to present biocaml to a part of the

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Preparing BOSC.

Hi everyone, Thanks to Ashish, we'll soon have a slot to present biocaml to a part of the

5/25/14

Francois Berenger, … Philippe Veber6

4/4/14

example AUC calculation

There is a rather simple auc function in there: https://github.com/EigenDog/dawg/blob/master/roc.ml I

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example AUC calculation

There is a rather simple auc function in there: https://github.com/EigenDog/dawg/blob/master/roc.ml I

4/4/14

Nevin Katz, Sebastien Mondet5

3/28/14

Biocaml Install Issue

Thanks! I'll check out both. Nevin On Fri, Mar 28, 2014 at 3:18 PM, Sebastien Mondet <

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Biocaml Install Issue

Thanks! I'll check out both. Nevin On Fri, Mar 28, 2014 at 3:18 PM, Sebastien Mondet <

3/28/14

Ashish Agarwal, … Francois Berenger5

3/17/14

Bioinformatics Js_of_ocaml GSoC project

For high quality data visualization, and for doing it cheap (in terms of manpower), one way is to

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Bioinformatics Js_of_ocaml GSoC project

For high quality data visualization, and for doing it cheap (in terms of manpower), one way is to

3/17/14

Ashish Agarwal, Philippe Veber2

2/1/14

API docs now published regularly

Sweet! 2014-01-31 Ashish Agarwal <agarw...@gmail.com> Hi all. Note you can now rely on our

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API docs now published regularly

Sweet! 2014-01-31 Ashish Agarwal <agarw...@gmail.com> Hi all. Note you can now rely on our

2/1/14

Ashish Agarwal, … Malcolm Matalka10

1/24/14

We have about a 50/50 split in favor of continuing with using Result.t's vs exceptions, and I

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We have about a 50/50 split in favor of continuing with using Result.t's vs exceptions, and I

1/24/14

Ashish Agarwal, … Sebastien Mondet29

1/23/14

future: abstraction over async, lwt, and blocking calls

I've created a new `future` library [1]. I'm using it in the `master` branch of biocaml and

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future: abstraction over async, lwt, and blocking calls

I've created a new `future` library [1]. I'm using it in the `master` branch of biocaml and

1/23/14

Philippe Veber, Ashish Agarwal2

12/8/13

The credit really goes to Anil Madhavapeddy [1] and Mike Lin [2]. Given their blog posts, setting up

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The credit really goes to Anil Madhavapeddy [1] and Mike Lin [2]. Given their blog posts, setting up

12/8/13

Philippe Veber, … Sebastien Mondet4

12/8/13

Splitting biocaml (Was: Incubator library (Was: Memory usage with transforms and streams))

2013/12/5 Ashish Agarwal <agarw...@gmail.com> Let's hold on splitting Biocaml just yet.

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Splitting biocaml (Was: Incubator library (Was: Memory usage with transforms and streams))

2013/12/5 Ashish Agarwal <agarw...@gmail.com> Let's hold on splitting Biocaml just yet.

12/8/13

Philippe Veber, … Ashish Agarwal13

12/8/13

Incubator library (Was: Memory usage with transforms and streams)

Ok guys, thanks for chatting on this. I'm not sure either that was a good idea to begin with. I

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Incubator library (Was: Memory usage with transforms and streams)

Ok guys, thanks for chatting on this. I'm not sure either that was a good idea to begin with. I

12/8/13

ssbssch...@gmail.com

12/7/13

1st announcement: Synthetic and Systems Biology Summer School: Biology meets Engineering and Computer Science, Taormina - Sicily, Italy June 15-19, 2014

______________________________________________________ Call for Participation (apologies for multiple

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1st announcement: Synthetic and Systems Biology Summer School: Biology meets Engineering and Computer Science, Taormina - Sicily, Italy June 15-19, 2014

______________________________________________________ Call for Participation (apologies for multiple

12/7/13

Philippe Veber, … Ashish Agarwal6

11/28/13

Memory usage with transforms and streams

That sounds pretty hairy indeed :). Please let me know if there is something I can do to help (

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Memory usage with transforms and streams

That sounds pretty hairy indeed :). Please let me know if there is something I can do to help (

11/28/13

Philippe Veber, Ashish Agarwal5

11/2/13

Stream to channel functions

Makes perfect sense, thanks! 2013/11/1 Ashish Agarwal <agarw...@gmail.com> On Fri, Nov 1,

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Stream to channel functions

Makes perfect sense, thanks! 2013/11/1 Ashish Agarwal <agarw...@gmail.com> On Fri, Nov 1,

11/2/13

9/21/13

Biocaml 0.3.0 in opam

Hi all. Please note Biocaml 0.3.0 is now in opam. No major feature enhancements. This was just to

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Biocaml 0.3.0 in opam

Hi all. Please note Biocaml 0.3.0 is now in opam. No major feature enhancements. This was just to

9/21/13

Ashish Agarwal, … Philippe Veber4

8/7/13

factoring out some modules

Hi Ashish, This is fine with me, and as said on another channel, I can take stream packaging in

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factoring out some modules

Hi Ashish, This is fine with me, and as said on another channel, I can take stream packaging in

8/7/13

Francois Berenger, Sebastien Mondet3

5/27/13

helping with code inlined in the ocamldoc of batteries-included

On 05/28/2013 01:47 AM, Sebastien Mondet wrote: > > You mean using `biohtml.ml <http://

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helping with code inlined in the ocamldoc of batteries-included

On 05/28/2013 01:47 AM, Sebastien Mondet wrote: > > You mean using `biohtml.ml <http://

5/27/13

Philippe Veber, … Francois Berenger4

4/21/13

API documentation

On 04/20/2013 12:03 AM, Sebastien Mondet wrote: > > Hi > > Glad you like it ! > >

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API documentation

On 04/20/2013 12:03 AM, Sebastien Mondet wrote: > > Hi > > Glad you like it ! > >

4/21/13

Francois Berenger, Ashish Agarwal4

3/27/13

transforming a logger into being lazy

I think it's better now (lazy + interface file). I think there is no simpler OCaml logger out

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transforming a logger into being lazy

I think it's better now (lazy + interface file). I think there is no simpler OCaml logger out

3/27/13

Ashish Agarwal2

2/28/13

release instructions

Development is now on branch v0.3-dev. I deleted the v0.2 branch. An opam package is available, but

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release instructions

Development is now on branch v0.3-dev. I deleted the v0.2 branch. An opam package is available, but

2/28/13

Ashish Agarwal, … Francois Berenger4

2/11/13

new frontpage for docs

OCaml Labs has a project to enhance OCaml's documentation system. That should hopefully provide

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new frontpage for docs

OCaml Labs has a project to enhance OCaml's documentation system. That should hopefully provide

2/11/13

Philippe Veber, Ashish Agarwal9

1/3/13

Commit notifications

Hi all. To resolve Philippe's request, I've created a new biocaml-commits mailing list. Feel

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Commit notifications

Hi all. To resolve Philippe's request, I've created a new biocaml-commits mailing list. Feel

1/3/13

Philippe Veber, … Francois Berenger16

12/25/12

Stream conversion for Hashtbl: dirty or lazy way?

On 12/25/2012 07:25 PM, Philippe Veber wrote: > Maybe Fran�ois meant Map instead of Set? If so,

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Stream conversion for Hashtbl: dirty or lazy way?

On 12/25/2012 07:25 PM, Philippe Veber wrote: > Maybe Fran�ois meant Map instead of Set? If so,

12/25/12

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