gheatmap: change width of cell border

Tatum Mortimer

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Oct 3, 2017, 10:07:51 AM10/3/17

to ggtree

Is it possible to change the width of the cell border in gheatmap? I have a large tree (~800 tips), which causes the cell border to take up the majority or all of the cell when I plot my data matrix.

Yu, Guangchuang

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Oct 9, 2017, 12:05:45 AM10/9/17

to Tatum Mortimer, ggtree

please refer to the function man page:

?gheatmap

On Tue, Oct 3, 2017 at 10:07 PM, Tatum Mortimer <tatumdm...@gmail.com> wrote:

Is it possible to change the width of the cell border in gheatmap? I have a large tree (~800 tips), which causes the cell border to take up the majority or all of the cell when I plot my data matrix.

--
G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data, Methods in Ecology and Evolution, 2017, 8(1):28-36. doi:10.1111/2041-210X.12628

Homepage: https://guangchuangyu.github.io/ggtree
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Guangchuang Yu, Postdoc researcher
State Key Laboratory of Emerging Infectious Diseases
School of Public Health
The University of Hong Kong

Hong Kong SAR, China

www: https://guangchuangyu.github.io

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Tatum Mortimer

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Oct 9, 2017, 10:17:02 AM10/9/17

to Yu, Guangchuang, ggtree

There is no option in the gheatmap man page to change the cell border width (I am using v 1.8.2). If anyone else is having this problem, I did discover that setting color = NA removes the cell border. Having an option to specify the width might be a nice addition for the future.

On Mon, Oct 9, 2017 at 12:05 AM Yu, Guangchuang <gc...@connect.hku.hk> wrote:

please refer to the function man page:
?gheatmap
On Tue, Oct 3, 2017 at 10:07 PM, Tatum Mortimer <tatumdm...@gmail.com> wrote:
Is it possible to change the width of the cell border in gheatmap? I have a large tree (~800 tips), which causes the cell border to take up the majority or all of the cell when I plot my data matrix.

--
G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data, Methods in Ecology and Evolution, 2017, 8(1):28-36. doi:10.1111/2041-210X.12628

Homepage: https://guangchuangyu.github.io/ggtree
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Yu, Guangchuang

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Oct 9, 2017, 10:40:37 AM10/9/17

to Tatum Mortimer, ggtree

The cell border width is proportion to the heatmap width and indeed has an option for it.

2017年10月9日下午10:17，"Tatum Mortimer" <tatumdm...@gmail.com>写道：

There is no option in the gheatmap man page to change the cell border width (I am using v 1.8.2). If anyone else is having this problem, I did discover that setting color = NA removes the cell border. Having an option to specify the width might be a nice addition for the future.

On Mon, Oct 9, 2017 at 12:05 AM Yu, Guangchuang <gc...@connect.hku.hk> wrote:

please refer to the function man page:
?gheatmap
On Tue, Oct 3, 2017 at 10:07 PM, Tatum Mortimer <tatumdm...@gmail.com> wrote:
Is it possible to change the width of the cell border in gheatmap? I have a large tree (~800 tips), which causes the cell border to take up the majority or all of the cell when I plot my data matrix.

--
G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data, Methods in Ecology and Evolution, 2017, 8(1):28-36. doi:10.1111/2041-210X.12628

Homepage: https://guangchuangyu.github.io/ggtree
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