How to combine strain information with a tree

[崔箐坡]

Is it possible to combine the strain information with the tree as the picture showed below. Any help or comments will be appreciate.

[xshua...@163.com]

Are you looking for http://yulab-smu.top/treedata-book/chapter10.html#api-to-link-ggtree-and-ggplot2. And the layout of tree can be rectangular.

[崔箐坡]

Thanks for your comments. I want to add metadata next to the tree such as the "patient”，”mlst”，＂k locus” columns in the picture. From the link you post, I did not find how to add these column. Do you know how to add metadata to the tree?

[Yu, Guangchuang]

Here is an example that you can follow: https://github.com/GuangchuangYu/plotTree-ggtree#curated-genes-coloured

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1. G Yu*. Using ggtree to visualize data on tree-like structures. Current Protocols in Bioinformatics. 2020, 69:e96. https://doi.org/10.1002/cpbi.96
2. LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu*. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution. 2020, 37(2):599-603. http://dx.doi.org/10.1093/molbev/msz240
3. G Yu*, TTY Lam, H Zhu, Y Guan*. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution, 2018, 35(2):3041-3043. https://doi.org/10.1093/molbev/msy194
4. G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data, Methods in Ecology and Evolution, 2017, 8(1):28-36. https://doi.org/10.1111/2041-210X.12628
5. Book: https://yulab-smu.top/treedata-book/
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Guangchuang Yu PhD

Professor, Associate Director

Department of Bioinformatics

School of Basic Medical Sciences

Southern Medical University

Guangzhou, China

www: https://guangchuangyu.github.io

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[崔箐坡]

Thanks, this answer my question. It works well.