Label tips with long edge length

18 views
Skip to first unread message

qiaoww

unread,
Mar 15, 2024, 7:25:49 PMMar 15
to ggtree
Dear ggtree experts,

I have a maximum likelihood tree generated by iqtree that has a few hundred tips. I would like to add tip labels to those with a long branch length (branches that stick out in my tree due to possible bad sequencing quality and therefore needs to be repeated). My tree is a S3: phylo object and I see an edge.length variable. Is there a way to show tip labels for those with certain edge.length (e.g. edge.length > 0.001)?

Thank you in advance for any advice!


Reply all
Reply to author
Forward
0 new messages