ggtree

Hello, I am trying to color branches and points according to group in a simple 2D pca

Hi, I just noticed that my command geom_range("height_0.95_HPD", color='gray', size

Hello, I'm trying to plot the geom_range for a single node or a subset of nodes with this code: t

gheatmap never draws tip labels. If the tree is visualization with tip labels then the final figure

The current version of ggtree/msaplot() uses a line (with bg_line=TRUE) to show the underlying MSA

Hello everybody. I am making a phylogenetic tree but when I add the bootstrap values ​​I get some

Hi, any news on this? It would be a nice feature actually resembling iTOLs functionality "Branch

Hello, I'm trying to plot a barplot with two statistics to the right of my tree. When I set the

Hi all, Does anybody know how to plot points or pie charts on the split of the tree, such as

Hi, I am trying to run a script from our group that has been used before to make a figure with the

Hi, First of all, thanks for developing such a great package. It's been extremely helpful for my

Hello, I have seen a few methods for inserting a scale under a phylogenetic tree, and/or using branch

Dear ggtree experts, I have a maximum likelihood tree generated by iqtree that has a few hundred tips

Hi, Thank you for providing such a good visualization tool for enrichment results. I have a minor

Hello, Thank you for the great package. After plotting a tree in which I used scale_fill_manual for

Hi everyone I have used the code for the circular tree with additional data annotation (Fig. 10.2,

Hi all, I have an MCC tree generated with BEAST with a temporal scale that only covers a few months.

Dear all, I wish to add a local image as a clade label. Guangchuang's book has an example of

Is there a way to specify an intermediate color using gheatmap for continuous variables? I have a

Trying to do something like this in R using ggtree. If someone has a tip be helpful

Anyone know how I can adapt this code 10.2 to include a light gray background behind the geom_boxplot

Hello everyone, First of all thank you for making this open source software it has been extremely

Hi everybody, I wanted to ask how to rescale internal nodes as black-filled circles with size

Hello, I am trying to plot a phylogenetic tree and results of an ADMIXTURE analysis (ie, results

Hi ! I have a tree which I want to colour specific edges. I managed to colour the edged with

Is this possible? Thanks! It would be helpful when using a dendrogram with some long branches and

Hi! While following the tutorial in the ggtree book, Chapter 2, section 2.2, I run into an error when

Hello, just wanted to follow up on this. Otherwise we will have to use a different library for the

Beautiful! Thanks so much! On Saturday, July 1, 2023 at 1:33:22 AM UTC+10 gc...@connect.hku.hk wrote:

hi! i'm trying to do something like that, but i cannot figure if it's possible with ggtree? i