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ggtree

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Mar 7

HOW LONG DOES DMT LAST ON THE BODY

Are you interested in exploring the world of psychedelic products? you might be wondering if it's

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HOW LONG DOES DMT LAST ON THE BODY

Are you interested in exploring the world of psychedelic products? you might be wondering if it's

Mar 7

Mar 5

issues with fill color in geom_fruit

As per this git issue, I'm struggling with adding fill colors to the box-plot generated by

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issues with fill color in geom_fruit

As per this git issue, I'm struggling with adding fill colors to the box-plot generated by

Mar 5

Feb 12

Custom colours for disagreements to consensus using ggmsa()

Hi, Is it possible to specify custom colours when plotting disagreements to the consenus of a

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Custom colours for disagreements to consensus using ggmsa()

Hi, Is it possible to specify custom colours when plotting disagreements to the consenus of a

Feb 12

Feb 10

Plotting the results of species delimitation analyses

Hi, Does anyone know if it is possible to easily plot the results of species delimitation analyses

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Plotting the results of species delimitation analyses

Hi, Does anyone know if it is possible to easily plot the results of species delimitation analyses

Feb 10

12/6/24

Multiple tree tanglegram

Hello, I really enjoy the package and the extensive manual, thanks a lot. Here is something I am

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Multiple tree tanglegram

Hello, I really enjoy the package and the extensive manual, thanks a lot. Here is something I am

12/6/24

11/22/24

Color branches and points according to clade

Hello, I am trying to color branches and points according to group in a simple 2D pca

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Color branches and points according to clade

Hello, I am trying to color branches and points according to group in a simple 2D pca

11/22/24

7/26/24

geom_range is centralized to the node height

Hi, I just noticed that my command geom_range("height_0.95_HPD", color='gray', size

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geom_range is centralized to the node height

Hi, I just noticed that my command geom_range("height_0.95_HPD", color='gray', size

7/26/24

7/16/24

geom_range for a subset of nodes

Hello, I'm trying to plot the geom_range for a single node or a subset of nodes with this code: t

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geom_range for a subset of nodes

Hello, I'm trying to plot the geom_range for a single node or a subset of nodes with this code: t

7/16/24

Lucy de lataillade, Guangchuang Yu2

7/16/24

Gheatmap tiplab

gheatmap never draws tip labels. If the tree is visualization with tip labels then the final figure

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Gheatmap tiplab

gheatmap never draws tip labels. If the tree is visualization with tip labels then the final figure

7/16/24

William Pearson

6/4/24

Adjusting line width for msaplot()

The current version of ggtree/msaplot() uses a line (with bg_line=TRUE) to show the underlying MSA

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Adjusting line width for msaplot()

The current version of ggtree/msaplot() uses a line (with bg_line=TRUE) to show the underlying MSA

6/4/24

5/28/24

Problem annotating bootstrap values

Hello everybody. I am making a phylogenetic tree but when I add the bootstrap values I get some

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Problem annotating bootstrap values

Hello everybody. I am making a phylogenetic tree but when I add the bootstrap values I get some

5/28/24

Kurt Wollenberg, Bastian2

5/24/24

Scaling branch width by support (or other parameters)

Hi, any news on this? It would be a nice feature actually resembling iTOLs functionality "Branch

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Scaling branch width by support (or other parameters)

Hi, any news on this? It would be a nice feature actually resembling iTOLs functionality "Branch

5/24/24

karl....@gmail.com

5/6/24

Offset ignored in geom_fruit with position_dodge2

Hello, I'm trying to plot a barplot with two statistics to the right of my tree. When I set the

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Offset ignored in geom_fruit with position_dodge2

Hello, I'm trying to plot a barplot with two statistics to the right of my tree. When I set the

5/6/24

4/17/24

How to plot points or pie charts on the split of the tree

Hi all, Does anybody know how to plot points or pie charts on the split of the tree, such as

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How to plot points or pie charts on the split of the tree

Hi all, Does anybody know how to plot points or pie charts on the split of the tree, such as

4/17/24

4/9/24

Unknown error using confirmed working script and sample data

Hi, I am trying to run a script from our group that has been used before to make a figure with the

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Unknown error using confirmed working script and sample data

Hi, I am trying to run a script from our group that has been used before to make a figure with the

4/9/24

4/9/24

ggtree tip label position and depth

Hi, First of all, thanks for developing such a great package. It's been extremely helpful for my

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ggtree tip label position and depth

Hi, First of all, thanks for developing such a great package. It's been extremely helpful for my

4/9/24

4/2/24

Tips for custom tree scaling

Hello, I have seen a few methods for inserting a scale under a phylogenetic tree, and/or using branch

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Tips for custom tree scaling

Hello, I have seen a few methods for inserting a scale under a phylogenetic tree, and/or using branch

4/2/24

3/15/24

Label tips with long edge length

Dear ggtree experts, I have a maximum likelihood tree generated by iqtree that has a few hundred tips

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Label tips with long edge length

Dear ggtree experts, I have a maximum likelihood tree generated by iqtree that has a few hundred tips

3/15/24

3/12/24

stop treeplot() to remove "redundancy" terms

Hi, Thank you for providing such a good visualization tool for enrichment results. I have a minor

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stop treeplot() to remove "redundancy" terms

Hi, Thank you for providing such a good visualization tool for enrichment results. I have a minor

3/12/24

2/27/24

scale_fill_manual ignored in gheatmap

Hello, Thank you for the great package. After plotting a tree in which I used scale_fill_manual for

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scale_fill_manual ignored in gheatmap

Hello, Thank you for the great package. After plotting a tree in which I used scale_fill_manual for

2/27/24

2/13/24

eliminating overlap of outer bar plots and inner heat maps

Hi everyone I have used the code for the circular tree with additional data annotation (Fig. 10.2,

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eliminating overlap of outer bar plots and inner heat maps

Hi everyone I have used the code for the circular tree with additional data annotation (Fig. 10.2,

2/13/24

Laura Mojsiejczuk

12/4/23

Beast MCC tree with x-axis in months

Hi all, I have an MCC tree generated with BEAST with a temporal scale that only covers a few months.

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Beast MCC tree with x-axis in months

Hi all, I have an MCC tree generated with BEAST with a temporal scale that only covers a few months.

12/4/23

11/17/23

geom_cladelab specification for annotating with local images

Dear all, I wish to add a local image as a clade label. Guangchuang's book has an example of

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geom_cladelab specification for annotating with local images

Dear all, I wish to add a local image as a clade label. Guangchuang's book has an example of

11/17/23

Tucker Heptinstall

11/3/23

Third, Intermediate color using gheatmap

Is there a way to specify an intermediate color using gheatmap for continuous variables? I have a

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Third, Intermediate color using gheatmap

Is there a way to specify an intermediate color using gheatmap for continuous variables? I have a

11/3/23

10/2/23

Phylogenetic tree with heatmap

Trying to do something like this in R using ggtree. If someone has a tip be helpful

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Phylogenetic tree with heatmap

Trying to do something like this in R using ggtree. If someone has a tip be helpful

10/2/23

10/1/23

Adding background to geom_boxplot

Anyone know how I can adapt this code 10.2 to include a light gray background behind the geom_boxplot

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Adding background to geom_boxplot

Anyone know how I can adapt this code 10.2 to include a light gray background behind the geom_boxplot

10/1/23

9/22/23

"best" parameter in the get.placements method for tree

Hello everyone, First of all thank you for making this open source software it has been extremely

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"best" parameter in the get.placements method for tree

Hello everyone, First of all thank you for making this open source software it has been extremely

9/22/23

Diego Caraballo

9/8/23

Show mrbayes prob as proportionally sized circles

Hi everybody, I wanted to ask how to rescale internal nodes as black-filled circles with size

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Show mrbayes prob as proportionally sized circles

Hi everybody, I wanted to ask how to rescale internal nodes as black-filled circles with size

9/8/23

8/10/23

Combined phylogenetic tree with admixture results

Hello, I am trying to plot a phylogenetic tree and results of an ADMIXTURE analysis (ie, results

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Combined phylogenetic tree with admixture results

Hello, I am trying to plot a phylogenetic tree and results of an ADMIXTURE analysis (ie, results

8/10/23

7/31/23

Colouring specific branches

Hi ! I have a tree which I want to colour specific edges. I managed to colour the edged with

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Colouring specific branches

Hi ! I have a tree which I want to colour specific edges. I managed to colour the edged with

7/31/23

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