sparql endpoints on bio2rdf are down

[b.n...@gmail.com]

Hi all, we are using the bio2rdf SPARQL endpoint for ClinicalTrials in our project, but currently it is down (a few hours back it was still working).

We noticed other SPARQL endpoints on bio2rdf.org are down as well (like PUBMED). Are the admins of bio2rdf.org aware that the SPARQL endpoints are down? And does anyone know how long they will stay down?

Thanks in advance!

Kind regards,

Barry

[Michel Dumontier]

Hi Barry,
There's currently only one endpoint for bio2rdf -> http://bio2rdf.org/sparql
It's back up.
Cheers,
m.
Michel Dumontier
Associate Professor of Medicine (Biomedical Informatics), Stanford University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
http://dumontierlab.com

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[Marija Djokic]

Hi Michel,

Endpoitns like http://drugbank.bio2rdf.org/sparql and http://uniprot.bio2rdf.org/sparql are down.

Could you please, fix it?

Thanks a lot.
Marija

[Michel Dumontier]

Dear Marija,
The service is back up. Thanks,

m.
Michel Dumontier
Associate Professor of Medicine (Biomedical Informatics), Stanford University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
http://dumontierlab.com

[Jerven Bolleman]

Dear Marina,

There is an official UniProt consortium sparql endpoint at

http://sparql.uniprot.org/

that you can use as well.

This one is updated monthly in sync with the UniProt releases.

If you have questions about how you can use that endpoint feel

free to write to he...@uniprot.org.

Regards,

Jerven

P.S. Michel they are down again...

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[bio2rdfuser]

Hi Michel, 

It seems that the main endpoint http://bio2rdf.org/sparql is still down for last 3 days.  

[Michel Dumontier]

please use http://sparql.openlifedata.org

thank you,

m.
Michel Dumontier
Associate Professor of Medicine (Biomedical Informatics), Stanford University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
http://dumontierlab.com

[barry...@tno.nl]

Hi all,

we are using http://clinicaltrials.bio2rdf.org/sparql in one of our project, but it's already down for a few days.

Does anyone know if it will come online anytime soon? Or has it been moved to http://sparql.openlifedata.org?

Thanks for providing bio2rdf!

Kind regards, Barry

[Michel Dumontier]

Hi Barry,

  Sure, feel free to use the openlifedata endpoint. I've just moved to Maastricht University, and we'll be setting up new infrastructure for bio2rdf/openlifedata over the course of the year. Stay tuned!

 

m.

Kind regards, Barry

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[Kingsley Idehen]

On 1/14/17 5:52 AM, Michel Dumontier wrote:

Hi Barry,

  Sure, feel free to use the openlifedata endpoint. I've just moved to Maastricht University, and we'll be setting up new infrastructure for bio2rdf/openlifedata over the course of the year. Stay tuned!

 

m.

On Fri, Jan 13, 2017 at 7:58 PM, <barry...@tno.nl> wrote:

Hi all,

we are using http://clinicaltrials.bio2rdf.org/sparql in one of our project, but it's already down for a few days.

Does anyone know if it will come online anytime soon? Or has it been moved to http://sparql.openlifedata.org?

Thanks for providing bio2rdf!

Kind regards, Barry

Repeating what I tweeted, you can try: http://lod.openlinksw.com/sparql :)

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[Michel Dumontier]

this is what i see at 

http://lod.openlinksw.com/sparql

Virtuoso 4000X Error SR176: Transaction rolled back due to previous SQL error 08C01 (((
CL...: Cluster could not connect to host 2 oplbfc3:22202 error 111
)))
in
WS.WS.SPARQL_ENDPOINT_GENERATE_FORM([executable]/sparql_io.sql:3061)

in any case, what version of data do you have from bio2rdf now?

m.

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[Kingsley Idehen]

On 1/17/17 6:03 PM, Michel Dumontier wrote:

this is what i see at 

http://lod.openlinksw.com/sparql

Virtuoso 4000X Error SR176: Transaction rolled back due to previous SQL error 08C01 (((
CL...: Cluster could not connect to host 2 oplbfc3:22202 error 111
)))
in
WS.WS.SPARQL_ENDPOINT_GENERATE_FORM([executable]/sparql_io.sql:3061)

in any case, what version of data do you have from bio2rdf now?

m.

Can't remember. That instance is due for reloading anyway.

It is up right now.


Kingsley

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Kingsley Idehen	      
Founder & CEO 
OpenLink Software   (Home Page: http://www.openlinksw.com)

Weblogs (Blogs):
Legacy Blog: http://www.openlinksw.com/blog/~kidehen/

[Michel Dumontier]

so is the bio2rdf endpoint. 

m.