ClinicalTrials.gov URIs contains special characters

[in...@johanvansoest.nl]

Hi everyone,

I was trying to extend the ClinicalTrials.gov bio2rdf conversion script (see https://github.com/jvsoest/bio2rdf-scripts/commit/ce09d8386f71f8a6c7b18f78ee0699e53133de23), and test it before creating a pull request.

Generation of triples runs fine, and creates the clinicaltrials.nq.gz file. However some URIs in this file are containing strange backslash characters at random locations (see example below, "clnicaltrials_voca\bulary").

Does anyone know what could cause this issue?

Thanks in advance!

Kind regards,
Johan

Example:
<http://bio2rdf.org/clinicaltrials_vocabulary:Clinical-Study> <http://bio2rdf.org/bio2rdf_vocabulary:namespace> "clinicaltrials_voca\bulary"^^<http://www.w3.org/2001/XMLSchema#string> <http://bio2rdf.org/clinicaltrials_resource:bio2rdf.dataset.clinicaltrials.R4> .

[Michel Dumontier]

Hi,

  Thanks for the improvement!

  That's a very strange error...  i posted the issue here:

https://github.com/bio2rdf/bio2rdf-scripts/issues/453

 let's follow up there

m.

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Michel Dumontier
Distinguished Professor of Data Science

Maastricht University
http://dumontierlab.com