Hi. I a working on a metagenomic data. I used Megahit to assemble the reads. I ran get-id to get the id.txt file and tried running Binsanity-profile for obtaining the coverage file. I used bbmap to generate the sam/bam file for input to Binsanity-profile. I am getting "GZIP ERROR:-2" (Please find the screen shot attached) when i try to run the Binsanity-profile. The saf file is getting generated but coverage file is not generated.
I checked the featurecount program and it looks working fine for me.
To get id.txt:
get-ids -f /media/rvcebt/Transcend/varun -l megahit.contigs.fa -o megahit_idHere is the command i used:
./Binsanity-profile -i /media/rvcebt/Transcend/varun/Assemblers/megahit.contigs.fa -s /media/rvcebt/Transcend/varun/ --id megahit_id.txt -c megahit_coverage
I am unable to figure out what is causing the error. Any aid to resolve this will be really helpful !!
Thanks in advance.
