BinSanity

Hello! I've been using binsanity since 2021 and I've never had any problems until I re-

I receive an error: Traceback (most recent call last): File '/global/apps/metagenomics/bbmap/lib/

Hi all, I am using BinSanity to cluster my contigs. After I am done with running BinSanity, it

Hi Jéssica, How big is your dataset? How much mem are you requesting? I checked some of our logs and

Hello, I am using the workflow from the anvi'o website; I started with their assembly-based

Hi Bill, Wow that's an insane number of bins but excited it got through! Interesting about checkM

Hello Julio, You can find that information here: https://github.com/edgraham/BinSanity/wiki/Usage But

Hello Jaber, I have fixed the inconsistent use of tabs issue (A lot of my python2 scripts had this

Just another thought but another possibility you can try is providing the full path to your coverage

Hello, The docke isn't something I implement often but I'll take a look at this ASAP. It may

Hi Nikhil, So in terms of K-means vs affinity propagation, the main reason our program using affinity

Hi Will, I apologize for not getting back to you sooner, but this is all great information. I'm

Hello, First check that you have all dependencies. I see you do not list having installed

This error seems to be indicating that one or more of the files the program is reading are in a

Thank you for pointing this out, that script is being overlooked when install binsanity via pip. I

Thanks Elaina! So say I have 5 samples (S1,S2,S3,S4,S5). First I have to do is to co-assemble them

My initial inclination would be to check if you have properly set the checkM data folders. So once

The newest version of BinSanity shouldn't throw this error. Let me know though it you continue to

Great! Thanks, Camilla On Thursday, 30 November 2017 09:20:10 UTC-7, edgraham wrote: Hi Camilla,

Hi Matt, I attempted to replicate this error, does Binsanity-profile fail to produce the `.saf` and `

We released v0.2.6! See the new and improved github wiki for more information!

Hello, So the Bin_evaluation script was written to calculate the adjusted rand index, precision, and

Hello, So this means there are 5 bins. To explain what those mean you have to think about how the

Hi Helen, Glad to hear it is all up and running! Let me know if there is anything else I can help

Hi,Community I'm very interested in your assembly software BinSanity. I have many samples how to

Hi All, I just wanted to give an update on the changes for v0.2.5.11 of BinSanity Binsanity-wf and

Hi Donovan, I updated Binsanity-wf and Binsanity-lc with a new flag to make running things in

Hi Elaina, Thanks for maintaining the software; highly appreciated! Best, Jeroen On Friday, 5 May

Hello Aditya, We have yet to explore parallel computting, but because the algorthim it uses is

Hello, We had some issues with the the last updates to that script I have been trying to work through