segmentation fault

[XH]

Hi,

I used the BIMBAM imputed genotypes (probability of distribution) to
do the analysis and got the segmentation fault.

The basic usage I put was: ./bimbam –g geno.distribution.txt –gmode 2 –
p pheno.txt –A –D –o test.out. Please let me know what is wrong.

Thanks.



XH

[Yongtao Guan]

Make sure you genotype distribution file look like this:

rs1 G C 0.992 0.001 0.000 1.000 0.002 0.02 ...
...

You have to supply numbers after -A and -D, otherwise bimbam will use
the default priors.
By the way, which version you are suing?

Grant

--
Yongtao Guan, PhD
Postdoctoral Fellow
Dept of Human Genetics
University of Chicago
http://home.uchicago.edu/~ytguan/

[XH]

I checked the data format. It is correct. The version is 0.99.

XH

> University of Chicagohttp://home.uchicago.edu/~ytguan/- Hide quoted text -
>
> - Show quoted text -

[Yongtao Guan]

I mean you use mac version or linux version?
Grant

[XH]

Linux version.

> >> University of Chicagohttp://home.uchicago.edu/~ytguan/-Hide quoted text -

[Yongtao Guan]

It's fixed. Please try it again.
You can directly download the executable from the following url:
http://quartus.uchicago.edu/~yguan/bimbam/bimbam_lin
It's a weird bug because it has to do with the compiler.

Grant

[XH]

We download this file and installed it. Still get the same error
message. Would you please double check?
Thanks.

XH

> >> >> University of Chicagohttp://home.uchicago.edu/~ytguan/-Hidequoted text -

[Yongtao Guan]

Well, if the bug still exists, you should get a different error message.
Could you retry?

Grant

[XH]

I used the new file you sent but still get the same error message.

XH

> >> >> >> University of Chicagohttp://home.uchicago.edu/~ytguan/-Hidequotedtext -

[Yongtao Guan]

Could you help me to recreate the scenario by emailing me the files
and command you used?
Grant