bids-discussion

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Welcome to bids-discussion mailing list where issues and extensions of the Brain Imaging Data Structure are discussed. Specification discussions can also be found: https://github.com/bids-standard/bids-specification

We are all colleagues working together to shape brain imaging for tomorrow, please be respectful, gracious, and patient with your fellow group members. If you have doubts about how to contribute check out the Contributor Guide.

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Apr 26

Formation of the BIDS Online Presence Working Group

I am writing you, the BIDS Community, to make our formation of the first BIDS Working Group official.

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Formation of the BIDS Online Presence Working Group

I am writing you, the BIDS Community, to make our formation of the first BIDS Working Group official.

Apr 26

Mastaneh Torkamani, … Dr Cyril Pernet4

Apr 12

Group-level analysis in BIDS

Dear Mastaneh results, being subject or group level can go into your derivatives folder - possibly

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Group-level analysis in BIDS

Dear Mastaneh results, being subject or group level can go into your derivatives folder - possibly

Apr 12

bids maintenance, Eric Earl3

Apr 5

BIDS Community Survey 2024

For those that haven't or couldn't respond to last month's BIDS Community Survey on

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BIDS Community Survey 2024

For those that haven't or couldn't respond to last month's BIDS Community Survey on

Apr 5

Chris Markiewicz

Mar 8

Vote: ADC and TRACE volumes

Hi all, There's been an ongoing conversation about how to encode scanner-generated ADC and TRACE

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Vote: ADC and TRACE volumes

Hi all, There's been an ongoing conversation about how to encode scanner-generated ADC and TRACE

Mar 8

Feb 2

Dear Colleagues, I would like to inform everyone that a new version of figbox https://figbox.co in

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Dear Colleagues, I would like to inform everyone that a new version of figbox https://figbox.co in

Feb 2

julius welzel, … Melanie Ganz3

12/12/23

Dear Julius, so the only thing I can say about this is that the details about what EHDS will be are

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Dear Julius, so the only thing I can say about this is that the details about what EHDS will be are

12/12/23

Joseph Ziminski, … Remi Gau5

12/5/23

Mixing datatype between subject and session level

Hi Everyone, Very sorry for the delay in reply! These responses were very useful for our discussions,

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Mixing datatype between subject and session level

Hi Everyone, Very sorry for the delay in reply! These responses were very useful for our discussions,

12/5/23

11/24/23

Release BIDS version 1.9.0

The link to schema is broken: here is a the correct one. https://bids-specification.readthedocs.io/en

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Release BIDS version 1.9.0

The link to schema is broken: here is a the correct one. https://bids-specification.readthedocs.io/en

11/24/23

bids maintenance

11/13/23

2023 BIDS Election Results: Steering Group and Governance amendments

Dear BIDS Contributors, We are pleased to announce that the newest members of the BIDS Steering Group

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2023 BIDS Election Results: Steering Group and Governance amendments

Dear BIDS Contributors, We are pleased to announce that the newest members of the BIDS Steering Group

11/13/23

bids maintenance

9/21/23

Extended nomination period (Re: BIDS Steering Group election - Nomination period for 2023)

Dear BIDS community, We are extending the nomination period for the BIDS Steering Group for an

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Extended nomination period (Re: BIDS Steering Group election - Nomination period for 2023)

Dear BIDS community, We are extending the nomination period for the BIDS Steering Group for an

9/21/23

Dr Cyril, Pernet, Dr. Tobias Leutritz5

9/20/23

help with RB1map

No idea, someone started collecting MP2RAGE and I saw we recompute and correct by saving the

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help with RB1map

No idea, someone started collecting MP2RAGE and I saw we recompute and correct by saving the

9/20/23

bids maintenance2

9/18/23

Fwd: BIDS Steering Group election - Nomination period for 2023

Dear BIDS community, Remember that the nomination period for electing 2 new Steering Group members

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Fwd: BIDS Steering Group election - Nomination period for 2023

Dear BIDS community, Remember that the nomination period for electing 2 new Steering Group members

9/18/23

Marie-Helene Bourget, … Dr Cyril, Pernet8

9/15/23

New BEP031: Microscopy

slightly tangential question : is there any matlab support for zarr? bids derivatives recommendation

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New BEP031: Microscopy

slightly tangential question : is there any matlab support for zarr? bids derivatives recommendation

9/15/23

Dr Cyril, Pernet2

9/13/23

BIDS derivatives guidelines

Hi all, This is a reminder about the existence of this document. We have started to merge some parts

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BIDS derivatives guidelines

Hi all, This is a reminder about the existence of this document. We have started to merge some parts

9/13/23

Chris Markiewicz

8/29/23

RFC: General conventions for spatial derivatives

Hi all I'd like to bring your attention to issue 1602 (https://github.com/bids-standard/bids-

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RFC: General conventions for spatial derivatives

Hi all I'd like to bring your attention to issue 1602 (https://github.com/bids-standard/bids-

8/29/23

Chris Markiewicz, Jon Clucas3

8/29/23

RFC: Replacing atlas entity with seg for specifying named segmentations

Hi all, Just wanted to bug everybody once again to offer your feedback on PR 1579 (https://github.com

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RFC: Replacing atlas entity with seg for specifying named segmentations

Hi all, Just wanted to bug everybody once again to offer your feedback on PR 1579 (https://github.com

8/29/23

8/8/23

INCF survey on data sharing

All, The INCF (incf.org) is conducting a global survey on data sharing. As you know, BIDS is an INCF-

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INCF survey on data sharing

All, The INCF (incf.org) is conducting a global survey on data sharing. As you know, BIDS is an INCF-

8/8/23

Hasnae Ag, Marcel Zwiers2

7/14/23

About BIDS Coin

Hi Hasnae, I accidentally came across your question. Did you manage to solve it? Otherwise, please

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About BIDS Coin

Hi Hasnae, I accidentally came across your question. Did you manage to solve it? Otherwise, please

7/14/23

7/11/23

BIDS-LinkAhead-Integration - Make your BIDS Data searchable and more - Online Event

Hello everyone, The recording of the event is now live: https://www.youtube.com/watch?v=Td3OSvjaOhg

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BIDS-LinkAhead-Integration - Make your BIDS Data searchable and more - Online Event

Hello everyone, The recording of the event is now live: https://www.youtube.com/watch?v=Td3OSvjaOhg

7/11/23

pold...@gmail.com, … Yaroslav Halchenko4

7/7/23

BIDS manuscript

Well -- consider - the list of working groups present in DICOM: https://www.dicomstandard.org/

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BIDS manuscript

Well -- consider - the list of working groups present in DICOM: https://www.dicomstandard.org/

7/7/23

Stefan Appelhoff

6/22/23

BIDS Governance amendments

The BIDS maintainers and steering groups propose several amendments to the BIDS governance. The

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BIDS Governance amendments

The BIDS maintainers and steering groups propose several amendments to the BIDS governance. The

6/22/23

Dr Cyril, Pernet

6/20/23

BIDS derivative meeting -- Zoom in Wednesday and Thursday

Hi all, BEP leads, maintainers, and the steering group are meeting tomorrow until Friday - 20-21-22

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BIDS derivative meeting -- Zoom in Wednesday and Thursday

Hi all, BEP leads, maintainers, and the steering group are meeting tomorrow until Friday - 20-21-22

6/20/23

Reza Eghbali, … Henk-Jan Mutsaerts (Henk)5

6/20/23

Sorry to only read this now. Principally this is indeed a derivative but if your scanner doesn't

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Sorry to only read this now. Principally this is indeed a derivative but if your scanner doesn't

6/20/23

Tom Hampshire, Remi Gau3

6/14/23

Hi Rémi, Yes please! Kind regards, Tom On Tue, 13 Jun 2023 at 12:30, Remi Gau <remi...@gmail.com

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Hi Rémi, Yes please! Kind regards, Tom On Tue, 13 Jun 2023 at 12:30, Remi Gau <remi...@gmail.com

6/14/23

6/1/23

Subject: Join the BIDS Connectivity Project and shape the future of Brain Connectivity Research! Dear Brain Research Enthusiasts, We are thrilled to announce the next phase of an exciting initiative: the BIDS Connectivity Project—an ambitious endea

We are thrilled to announce the next phase of an exciting initiative: the BIDS Connectivity Project—

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Subject: Join the BIDS Connectivity Project and shape the future of Brain Connectivity Research! Dear Brain Research Enthusiasts, We are thrilled to announce the next phase of an exciting initiative: the BIDS Connectivity Project—an ambitious endea

We are thrilled to announce the next phase of an exciting initiative: the BIDS Connectivity Project—

6/1/23

Suyash, Remi Gau2

5/21/23

BIDS Contributor History

There is no such thing that I am aware of. Not even sure where to find the "original"

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BIDS Contributor History

There is no such thing that I am aware of. Not even sure where to find the "original"

5/21/23

Anthony Galassi, … Cyril Pernet4

5/17/23

Updating bids.neuroimaging.io/acknowledgements.html w/ "indirect" support

Sorry Yarik, seeing that PR you made to the website. Moving this discussion over to the comments

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Updating bids.neuroimaging.io/acknowledgements.html w/ "indirect" support

Sorry Yarik, seeing that PR you made to the website. Moving this discussion over to the comments

5/17/23

5/9/23

Revisiting space definition in BIDS (reference frames, coordsys) with respect to Motion extension

Dear everyone in BIDS community, In the past couple of days, I have been in corresponding with Robert

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Revisiting space definition in BIDS (reference frames, coordsys) with respect to Motion extension

Dear everyone in BIDS community, In the past couple of days, I have been in corresponding with Robert

5/9/23

Guiomar Niso, … Vince D Calhoun15

4/27/23

Hi Guiomar, Count me in, sounds really interesting. And who knows, maybe methods sections on the same

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Hi Guiomar, Count me in, sounds really interesting. And who knows, maybe methods sections on the same

4/27/23

Melissa Kline Struhl

4/13/23

Data standards software position at MIT

Dear all, I am hiring a software engineer (remote within the United States) for a project creating

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Data standards software position at MIT

Dear all, I am hiring a software engineer (remote within the United States) for a project creating

4/13/23

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